##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547449_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 3011731 Sequences flagged as poor quality 0 Sequence length 51 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.28186713886466 31.0 31.0 33.0 30.0 34.0 2 31.691716491280264 31.0 31.0 34.0 30.0 34.0 3 31.833142136532114 31.0 31.0 34.0 30.0 34.0 4 35.574642954500256 37.0 35.0 37.0 33.0 37.0 5 35.451072157506765 37.0 35.0 37.0 33.0 37.0 6 35.49159768916945 37.0 35.0 37.0 33.0 37.0 7 35.91820783463065 37.0 35.0 37.0 35.0 37.0 8 35.945891913985676 37.0 35.0 37.0 35.0 37.0 9 37.676550462176074 39.0 37.0 39.0 35.0 39.0 10 36.99327330362506 39.0 37.0 39.0 33.0 39.0 11 36.81212365911829 39.0 37.0 39.0 32.0 39.0 12 36.323645106418866 38.0 35.0 39.0 32.0 39.0 13 36.1365862356233 38.0 35.0 39.0 32.0 39.0 14 37.22177013816971 39.0 35.0 41.0 32.0 41.0 15 37.368468498680656 39.0 35.0 41.0 32.0 41.0 16 37.42628242694982 39.0 35.0 41.0 32.0 41.0 17 37.355792731821005 39.0 35.0 41.0 32.0 41.0 18 37.26799903444232 39.0 36.0 41.0 32.0 41.0 19 37.220267347913875 39.0 35.0 41.0 32.0 41.0 20 37.093465850701804 39.0 35.0 41.0 32.0 41.0 21 37.02146141205838 39.0 35.0 41.0 31.0 41.0 22 36.9424175001021 39.0 35.0 41.0 31.0 41.0 23 36.851669023561534 39.0 35.0 41.0 31.0 41.0 24 36.773709869838974 38.0 35.0 41.0 31.0 41.0 25 36.67375771607757 38.0 35.0 40.0 31.0 41.0 26 36.521113273396594 38.0 35.0 40.0 31.0 41.0 27 36.42281199748583 38.0 35.0 40.0 30.0 41.0 28 36.34264813158944 38.0 35.0 40.0 30.0 41.0 29 36.38641864097424 38.0 35.0 40.0 30.0 41.0 30 36.317779376710604 38.0 35.0 40.0 30.0 41.0 31 36.214691152695906 38.0 35.0 40.0 30.0 41.0 32 36.141480098986264 38.0 35.0 40.0 30.0 41.0 33 36.05327965877431 38.0 35.0 41.0 30.0 41.0 34 35.94166012834479 38.0 35.0 41.0 29.0 41.0 35 35.83177813689204 38.0 35.0 41.0 29.0 41.0 36 35.775075529653876 38.0 35.0 41.0 28.0 41.0 37 35.730223582385015 38.0 35.0 41.0 28.0 41.0 38 35.60828573335401 38.0 34.0 40.0 27.0 41.0 39 35.5127708948774 38.0 34.0 40.0 27.0 41.0 40 35.38023050531405 38.0 34.0 40.0 26.0 41.0 41 35.27607279667407 38.0 34.0 40.0 26.0 41.0 42 35.21460681581456 38.0 34.0 40.0 26.0 41.0 43 35.17440701045346 38.0 34.0 40.0 26.0 41.0 44 35.04449102526089 38.0 34.0 40.0 25.0 41.0 45 34.89808717976473 38.0 34.0 40.0 24.0 41.0 46 34.86204544828207 38.0 34.0 40.0 24.0 41.0 47 34.82132069563982 37.0 34.0 40.0 24.0 41.0 48 34.744217528059444 37.0 34.0 40.0 24.0 41.0 49 34.67730750189841 37.0 34.0 40.0 24.0 41.0 50 34.55970901783725 37.0 34.0 40.0 24.0 41.0 51 33.97385257846733 36.0 33.0 40.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 0.0 10 3.0 11 2.0 12 6.0 13 9.0 14 17.0 15 75.0 16 221.0 17 565.0 18 1301.0 19 2422.0 20 4355.0 21 6966.0 22 10777.0 23 15826.0 24 23090.0 25 32724.0 26 42257.0 27 49963.0 28 56894.0 29 66130.0 30 78165.0 31 94100.0 32 114127.0 33 144501.0 34 219166.0 35 308502.0 36 231738.0 37 293224.0 38 433856.0 39 780304.0 40 444.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 34.460680585351085 23.80039917243605 28.766911785946352 12.972008456266511 2 31.048456850894052 25.64040413967914 29.815943057331477 13.495195952095324 3 29.55104556150599 26.044324675742953 30.619534081895093 13.78509568085596 4 25.33157841786003 29.698967138831456 29.980001534001545 14.989452909306975 5 23.572058726360357 32.70248903371517 29.109339446318412 14.61611279360607 6 21.82432627615149 41.69502521971584 26.25178012246114 10.228868381671537 7 89.39719383968887 3.2828961152241023 5.911484126570401 1.408425918516627 8 89.01528722186676 3.124714657451147 5.497702152018224 2.362295968663868 9 83.17572186891857 6.72902061970342 7.481478259512553 2.6137792518654552 10 32.08540204951903 43.1897470258798 13.100406377594812 11.624444547006355 11 34.05221117025391 24.544323513620572 26.01118758614232 15.392277729983189 12 31.717606917749297 23.85143294670075 26.291956353339657 18.1390037822103 13 24.090000069727342 30.662532609984094 28.389786471633755 16.85768084865481 14 19.37736139117338 33.37369771735922 29.22711224873669 18.021828642730707 15 17.524871909211015 27.589084151273802 37.793116317493165 17.09292762202202 16 20.68879989613946 25.892949934771732 35.623267815087075 17.794982354001736 17 20.692850722723907 25.702893120268712 28.535649432170402 25.06860672483698 18 21.131867354687387 26.06899487371216 32.512863864667864 20.286273906932593 19 25.149258018063364 26.83280810935638 28.671518140232312 19.34641573234794 20 26.975948383172334 26.751924391653837 27.495649511858794 18.776477713315035 21 23.47952058135338 28.28732048114523 30.22763321159825 18.005525725903144 22 23.682194724562052 24.796105628291503 29.188463378701485 22.33323626844496 23 19.652551970942955 29.960411471011188 28.744433018752343 21.642603539293514 24 19.57688120220564 26.726092071303846 34.712661921001576 18.984364805488937 25 20.449900738146933 28.214339195632014 31.193489724015855 20.142270342205197 26 19.690603178039474 32.366934497138026 27.989119878236135 19.953342446586365 27 18.543223149743454 31.713224056198907 29.592118286792545 20.151434507265094 28 17.3906633759788 29.560408947545447 33.75972156875896 19.28920610771679 29 18.818148101540277 26.76381124343442 32.72334082957608 21.694699825449216 30 20.500602477445696 29.858509939964755 29.784532549553727 19.85635503303582 31 23.63079571183482 28.087003786194714 27.50956177693161 20.772638725038856 32 24.215907728811107 28.31574267422954 28.1204065037681 19.347943093191258 33 23.85472009286354 27.375718482161922 27.49222955170963 21.27733187326491 34 20.017325584522656 29.161834174433242 29.20911595358284 21.611724287461264 35 19.810168969273818 27.200570037629525 30.72791029477732 22.261350698319337 36 23.94490078961235 28.58821056727842 27.773928016811595 19.692960626297634 37 19.76803373209626 31.814428313816872 28.18050483260291 20.237033121483957 38 20.019749439774003 31.463600168806575 27.27331889866658 21.24333149275284 39 20.185434887777163 29.711285636067764 28.890428793275362 21.212850682879715 40 22.66543725186612 27.498006960116957 28.414323855616587 21.422231932400337 41 18.98423199150256 26.696972604791064 29.87361753091495 24.44517787279143 42 21.38076076515466 27.83930570160483 28.103472720505252 22.676460812735264 43 20.77058010825004 27.00294282590311 29.17670934090727 23.049767724939578 44 20.44807454583427 28.166260532564163 29.58152637137912 21.804138550222447 45 18.89474856818222 31.082789266372064 27.18967929074675 22.832782874698967 46 21.05008714257681 29.781079385907972 28.630677839421914 20.538155632093304 47 20.680532225487603 28.039589193058745 29.143505844313456 22.136372737140203 48 20.30148110837256 27.51646810422312 31.06436132576249 21.117689461641824 49 20.83396558324764 27.138678719978643 30.797305602658405 21.23005009411531 50 19.928041382181874 29.82753107764273 29.043297691593306 21.201129848582095 51 19.03958222032446 29.8577462595431 28.57117717352579 22.531494346606653 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2417.0 1 3756.0 2 5095.0 3 13787.5 4 22480.0 5 16052.0 6 9624.0 7 10551.0 8 11478.0 9 12066.0 10 12654.0 11 13559.5 12 14465.0 13 14529.5 14 14594.0 15 15405.5 16 16217.0 17 15412.5 18 14608.0 19 15619.0 20 16630.0 21 16916.5 22 17203.0 23 17626.0 24 18049.0 25 23011.0 26 34197.0 27 40421.0 28 47800.0 29 55179.0 30 60216.5 31 65254.0 32 72416.5 33 79579.0 34 95223.5 35 110868.0 36 118270.0 37 125672.0 38 135028.5 39 144385.0 40 167454.5 41 190524.0 42 213441.5 43 236359.0 44 245123.0 45 253887.0 46 257753.0 47 261619.0 48 262749.5 49 263880.0 50 247339.0 51 230798.0 52 206457.5 53 182117.0 54 164510.5 55 146904.0 56 129277.0 57 111650.0 58 101100.5 59 90551.0 60 77958.0 61 65365.0 62 57454.5 63 49544.0 64 43459.0 65 37374.0 66 31140.5 67 24907.0 68 19831.5 69 14756.0 70 11697.5 71 8639.0 72 7796.5 73 6954.0 74 5831.0 75 3842.0 76 2976.0 77 2308.0 78 1640.0 79 1331.0 80 1022.0 81 690.0 82 358.0 83 294.0 84 230.0 85 157.0 86 84.0 87 55.0 88 26.0 89 17.5 90 9.0 91 6.0 92 3.0 93 2.0 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 3011731.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 16.499074546008348 #Duplication Level Percentage of deduplicated Percentage of total 1 79.17095093893045 13.062474214197831 2 8.960509372836684 2.9568022422527793 3 3.082439540088776 1.525721992664652 4 1.578072026674111 1.0414691202826651 5 0.8555382949062209 0.7057795052311305 6 0.5766193416293205 0.5708211301327448 7 0.3959735934442263 0.45732384855409636 8 0.3006201288805183 0.3967963133144247 9 0.2371363848172428 0.352127780160355 >10 2.06304037490049 7.778808509012134 >50 0.9082392017466613 11.115887900775554 >100 1.8592443456811936 57.77079257797348 >500 0.008967088428449777 0.9642890191239548 >1k 0.0022417721071124443 0.6666432140718156 >5k 2.0379746428294952E-4 0.17844625930995286 >10k+ 2.0379746428294952E-4 0.4558163729424762 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 13556 0.45010659982581447 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 5307 0.17621095642339904 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.05740884561071357 0.0 2 0.0 0.0 0.0 0.1864376333742954 0.0 3 0.0 0.0 0.0 0.28508522175453255 0.0 4 0.0 0.0 0.0 0.6097490114488977 0.0 5 0.0 0.0 0.0 0.9738585550967201 0.0 6 0.0 0.0 0.0 1.577896565131481 0.0 7 0.0 0.0 0.0 1.7967740146779376 0.0 8 0.0 0.0 0.0 2.415023121254853 0.0 9 0.0 0.0 0.0 2.5970778930787644 0.0 10 0.0 0.0 0.0 2.975830178724461 0.0 11 0.0 0.0 0.0 3.448647970220448 0.0 12 0.0 0.0 0.0 3.8427402712924894 0.0 13 0.0 0.0 0.0 4.014302738192754 0.0 14 0.0 0.0 0.0 4.079813236972359 0.0 15 0.0 0.0 0.0 4.184171826766733 0.0 16 0.0 0.0 0.0 4.401887153932407 0.0 17 0.0 0.0 0.0 4.639358561571402 0.0 18 0.0 0.0 0.0 4.947254585485888 0.0 19 0.0 0.0 0.0 5.09540858728751 0.0 20 0.0 0.0 0.0 5.266340187752492 0.0 21 0.0 0.0 0.0 5.4785105309869975 0.0 22 0.0 0.0 0.0 5.7122963505040785 0.0 23 0.0 0.0 0.0 5.953254125285426 0.0 24 0.0 0.0 0.0 6.141584357965568 0.0 25 0.0 0.0 0.0 6.302156467493279 0.0 26 0.0 0.0 0.0 6.455888656722662 0.0 27 0.0 0.0 0.0 6.613406044563741 0.0 28 0.0 0.0 0.0 6.775339497451798 0.0 29 0.0 0.0 0.0 6.9621091657920315 0.0 30 0.0 0.0 0.0 7.176304922318759 0.0 31 0.0 0.0 0.0 7.371275854317666 0.0 32 0.0 0.0 0.0 7.558676389093183 0.0 33 0.0 0.0 0.0 7.74913164555533 0.0 34 0.0 0.0 0.0 7.949747171975186 0.0 35 0.0 0.0 0.0 8.170915662786618 0.0 36 0.0 0.0 0.0 8.38003128433449 0.0 37 0.0 0.0 0.0 8.58815080098455 0.0 38 0.0 0.0 0.0 8.79783088197452 0.0 39 0.0 0.0 0.0 9.069236263132398 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGAACGC 20 7.035108E-4 45.000004 25 GTCGACG 20 7.035108E-4 45.000004 25 CGCTATA 20 7.035108E-4 45.000004 32 CGCTAGC 30 2.1666783E-6 45.000004 12 TCCCGTA 20 7.035108E-4 45.000004 29 ACGCGTT 20 7.035108E-4 45.000004 18 CGTTGCC 50 2.1827873E-11 45.0 27 GTTCGAC 25 3.8923175E-5 45.0 32 CGACGGT 470 0.0 44.042553 28 TAGTACG 200 0.0 41.625 1 TCCGCTA 55 6.184564E-11 40.909092 25 CTCACGA 515 0.0 40.194176 24 CGTTTTT 8155 0.0 40.033722 1 TACGCTA 45 1.9301297E-8 40.0 25 TGTCGCG 45 1.9301297E-8 40.0 23 CGAAGTA 45 1.9301297E-8 40.0 33 GACGGTC 520 0.0 39.807693 29 CACGACG 525 0.0 39.42857 26 CGAACTA 40 3.4607183E-7 39.375004 20 TATCGTG 40 3.4607183E-7 39.375004 1 >>END_MODULE