SRR1547446_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547446_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2301858
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	11311	0.49138565454515437	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	2728	0.11851295779322618	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AATCTCG	20	7.034762E-4	45.000004	18
TTGCGAT	20	7.034762E-4	45.000004	27
CATACGT	40	6.8193913E-9	45.000004	32
GTACGAC	20	7.034762E-4	45.000004	36
TTAGGCG	25	3.8920298E-5	45.0	40
TAAGTCG	35	1.2126475E-7	45.0	1
CGACGGT	330	0.0	44.318184	28
CGGTCTA	335	0.0	43.656715	31
CGTAAGG	430	0.0	42.906975	2
AACGGGA	710	0.0	41.830986	4
TCACGAC	365	0.0	41.301373	25
GAGCGTA	60	3.6379788E-12	41.250004	9
CGTATGG	110	0.0	40.909092	2
AATACGG	210	0.0	40.714287	2
TACGGGT	100	0.0	40.5	4
TGATTCG	100	0.0	40.5	15
AGGGCGC	295	0.0	40.42373	6
TACGGGA	735	0.0	40.408165	4
TAATACG	45	1.9297659E-8	40.0	1
TATTGCG	210	0.0	39.642857	1