##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547446_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2301858 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.252129366798474 31.0 31.0 33.0 30.0 34.0 2 31.640568184484014 31.0 31.0 34.0 30.0 34.0 3 31.790786399508573 31.0 31.0 34.0 30.0 34.0 4 35.524818646502084 37.0 35.0 37.0 33.0 37.0 5 35.39580851642456 37.0 35.0 37.0 33.0 37.0 6 35.44082736641444 37.0 35.0 37.0 33.0 37.0 7 35.87858981744313 37.0 35.0 37.0 35.0 37.0 8 35.909522655176815 37.0 35.0 37.0 35.0 37.0 9 37.633037311597846 39.0 37.0 39.0 35.0 39.0 10 36.945966692993224 39.0 37.0 39.0 32.0 39.0 11 36.65754664275555 39.0 35.0 39.0 32.0 39.0 12 36.052606633423956 38.0 35.0 39.0 31.0 39.0 13 35.797809856211806 38.0 35.0 39.0 31.0 39.0 14 36.867341947244356 39.0 35.0 41.0 31.0 41.0 15 37.06815972140766 39.0 35.0 41.0 32.0 41.0 16 37.16611363515908 39.0 35.0 41.0 32.0 41.0 17 37.08413203594662 39.0 35.0 41.0 32.0 41.0 18 37.01951944907114 38.0 35.0 41.0 32.0 41.0 19 36.960301634592575 38.0 35.0 41.0 31.0 41.0 20 36.83193359451365 38.0 35.0 41.0 31.0 41.0 21 36.74267743709647 38.0 35.0 41.0 31.0 41.0 22 36.62982946819482 38.0 35.0 40.0 31.0 41.0 23 36.579542265422106 38.0 35.0 40.0 31.0 41.0 24 36.472851062055085 38.0 35.0 40.0 31.0 41.0 25 36.37682254943615 38.0 35.0 40.0 31.0 41.0 26 36.18640202827455 38.0 35.0 40.0 30.0 41.0 27 36.091732852330594 38.0 35.0 40.0 30.0 41.0 28 35.99044206897211 38.0 35.0 40.0 30.0 41.0 29 36.08931784671339 38.0 35.0 40.0 30.0 41.0 30 36.02727883301229 38.0 35.0 40.0 30.0 41.0 31 35.956223190135965 38.0 35.0 40.0 30.0 41.0 32 35.84464376169164 38.0 34.0 40.0 30.0 41.0 33 35.7866753726772 38.0 34.0 40.0 29.0 41.0 34 35.6907771895573 38.0 34.0 40.0 29.0 41.0 35 35.615633110296116 38.0 34.0 40.0 29.0 41.0 36 35.54625393920911 38.0 34.0 40.0 28.0 41.0 37 35.49910724293158 38.0 34.0 40.0 27.0 41.0 38 35.4159748342426 38.0 34.0 40.0 27.0 41.0 39 35.362417664338984 38.0 34.0 40.0 27.0 41.0 40 35.24583097654156 37.0 34.0 40.0 27.0 41.0 41 35.16841699183877 37.0 34.0 40.0 27.0 41.0 42 35.12665073171325 37.0 34.0 40.0 27.0 41.0 43 35.09265297859381 37.0 34.0 40.0 27.0 41.0 44 34.95616236970309 37.0 34.0 40.0 26.0 41.0 45 34.8207508890644 37.0 34.0 40.0 26.0 41.0 46 34.77673905167043 37.0 34.0 40.0 26.0 41.0 47 34.72927435141525 36.0 33.0 40.0 26.0 41.0 48 34.647408311025266 36.0 33.0 40.0 26.0 41.0 49 34.56880398356458 36.0 33.0 40.0 26.0 41.0 50 34.44427154064238 36.0 33.0 40.0 25.0 41.0 51 33.8978603371711 35.0 33.0 39.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 2.0 10 1.0 11 3.0 12 3.0 13 6.0 14 25.0 15 70.0 16 192.0 17 404.0 18 1014.0 19 1807.0 20 3222.0 21 5320.0 22 8139.0 23 12008.0 24 16797.0 25 24073.0 26 31969.0 27 38823.0 28 45092.0 29 52734.0 30 62305.0 31 76619.0 32 94152.0 33 119290.0 34 191335.0 35 273758.0 36 178323.0 37 217131.0 38 312221.0 39 534693.0 40 327.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 34.821305223866986 24.003001053931218 28.482295606418816 12.693398115782989 2 30.542718099900167 26.092573912031064 29.7017452857648 13.662962702303966 3 30.14247620834995 26.04357002039222 30.263856415122042 13.550097356135781 4 26.351408297123452 28.285193960704785 30.66466306783477 14.698734674336992 5 23.763238218864934 31.936287989962892 29.024987640419177 15.275486150753 6 21.78627004793519 41.97639472113397 25.7008903242511 10.536444906679735 7 88.28011979887552 4.198043493560419 5.7313266065934565 1.7905101009706073 8 88.49855203926568 3.62242153946942 5.459763373761544 2.4192630475033647 9 83.52187667527711 6.258683202873505 7.401108148287166 2.8183319735622265 10 42.50127505693227 33.49724439995864 12.776331120338439 11.225149422770649 11 37.1520310983562 23.131270478022536 23.859377945989717 15.857320477631548 12 34.73446233434034 21.411659624529403 26.93476313482413 16.919114906306124 13 23.141566508446655 31.912568021137705 27.000970520336182 17.94489495007946 14 17.97013542972677 36.00361099598672 28.313823007327127 17.712430566959387 15 17.049922280175405 27.112967003177435 39.516686085762025 16.320424630885135 16 19.94988396330269 23.578691648225043 38.717288381820254 17.75413600665202 17 19.16343232293217 23.88162084715912 28.811203818828098 28.143743011080613 18 22.338041703701965 26.44850377390786 30.236356890824716 20.97709763156546 19 26.932677862839498 26.99241221656592 26.259960431964092 19.81494948863049 20 30.30968895561759 24.653996901633377 26.23745687179661 18.79885727095242 21 24.691531797356745 27.935302698950153 27.66969117990771 19.703474323785393 22 23.550236374268092 25.75354344186305 26.45089314805692 24.24532703581194 23 22.325703844459564 29.17273784916359 25.91549956600277 22.586058740374078 24 21.562016423254608 25.708840423692514 33.76294280533378 18.966200347719102 25 21.048083765375623 26.500635573523653 30.823621613496577 21.627659047604155 26 19.57701126655076 32.64649687339532 27.157887237179708 20.61860462287422 27 21.005639791855103 32.316068150163915 27.319191713824225 19.35910034415676 28 18.660881774635968 29.797537467558815 32.75658185691733 18.784998900887892 29 20.29512680625825 27.00653124562853 31.668808414767547 21.02953353334567 30 21.40957435254477 29.080160461679217 29.831683796307157 19.678581389468857 31 27.262889370239172 27.87739295821028 24.88876377256981 19.97095389898074 32 28.186664859430948 27.367500514801524 25.93830722833468 18.507527397432856 33 25.922363586285513 29.139199724744095 25.076829239683768 19.86160744928662 34 21.16190486120343 28.627786770513215 28.465178998878297 21.745129369405063 35 21.708854325505744 27.165055359626876 29.056179833855957 22.069910481011426 36 26.051520119833633 29.628196005140197 25.646542923151642 18.673740951874528 37 21.878586776421482 31.214392894783256 28.094478460443696 18.812541868351566 38 21.031401589498568 32.16219245496465 25.51955854792085 21.286847407615937 39 21.853563512605902 29.91826602683571 27.626334899893912 20.601835560664473 40 23.471647686347293 26.873508270275575 28.272899544628732 21.381944498748403 41 19.198968833003597 26.764031491082424 29.088501549617746 24.948498126296233 42 22.00861217329653 27.595229592789828 26.298494520513426 24.09766371340022 43 22.756051850287896 26.731058127825435 27.071739438314612 23.441150583572053 44 20.983310004353008 29.51819790795088 27.589929526495556 21.90856256120056 45 20.50582616303873 32.18565176479174 25.03151801718438 22.27700405498515 46 21.936279301329623 31.380823665056663 26.186063606008712 20.496833427605004 47 21.894617304803337 27.739808450390946 28.047168852292366 22.318405392513352 48 22.119001258982962 25.72843329171478 30.433458536538744 21.719106912763518 49 21.87241784680028 26.578398841283867 29.454901214584044 22.094282097331806 50 19.823638121899787 29.572979740713805 28.534557735533646 22.068824401852762 51 18.87944434452516 30.48650264264781 27.12035234145634 23.513700671370692 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 3029.0 1 3568.0 2 4107.0 3 11041.5 4 17976.0 5 12695.0 6 7414.0 7 7544.0 8 7674.0 9 8536.0 10 9398.0 11 9841.5 12 10285.0 13 10050.5 14 9816.0 15 9445.0 16 9074.0 17 8577.5 18 8081.0 19 8110.5 20 8140.0 21 9518.5 22 10897.0 23 12167.0 24 13437.0 25 14173.5 26 19694.5 27 24479.0 28 28820.0 29 33161.0 30 36164.5 31 39168.0 32 47347.5 33 55527.0 34 57844.5 35 60162.0 36 68276.5 37 76391.0 38 88933.5 39 101476.0 40 124188.5 41 146901.0 42 164828.0 43 182755.0 44 197143.0 45 211531.0 46 211898.5 47 212266.0 48 199974.5 49 187683.0 50 170439.5 51 153196.0 52 141679.5 53 130163.0 54 125102.0 55 120041.0 56 110277.0 57 100513.0 58 97928.5 59 95344.0 60 86987.5 61 78631.0 62 67355.0 63 56079.0 64 46017.0 65 35955.0 66 29634.5 67 23314.0 68 18916.0 69 14518.0 70 12724.5 71 10931.0 72 9267.0 73 7603.0 74 6458.0 75 3767.0 76 2221.0 77 1789.0 78 1357.0 79 951.0 80 545.0 81 376.5 82 208.0 83 139.0 84 70.0 85 58.0 86 46.0 87 33.5 88 21.0 89 21.5 90 22.0 91 19.5 92 17.0 93 13.5 94 10.0 95 6.0 96 2.0 97 1.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2301858.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 17.519217967136782 #Duplication Level Percentage of deduplicated Percentage of total 1 77.98487719905607 13.662340617906585 2 8.745040740711412 3.06412549736029 3 3.1231959940050795 1.6414785411919024 4 1.5612891635920598 1.0941026066679187 5 0.8757693675526366 0.7671397219548084 6 0.5628974411089518 0.591691377835876 7 0.3999780139934057 0.49051114064490714 8 0.31515791368164336 0.44170561470854314 9 0.2459590379288393 0.38781089968163385 >10 2.9970939981465534 13.22094063549413 >50 1.6140801064112593 20.656236927367285 >100 1.563370433311409 41.78916785660663 >500 0.008028864356029418 0.9224620894916882 >1k 0.0030108241335110317 0.7730993629076437 >5k 0.0 0.0 >10k+ 2.509020111259193E-4 0.4971871101801432 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 11311 0.49138565454515437 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 2728 0.11851295779322618 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.07011727048323571 0.0 2 0.0 0.0 0.0 0.2518400353106056 0.0 3 0.0 0.0 0.0 0.3758268320634896 0.0 4 0.0 0.0 0.0 0.6416990101040116 0.0 5 0.0 0.0 0.0 1.0875127831516975 0.0 6 0.0 0.0 0.0 1.613001323278847 0.0 7 0.0 0.0 0.0 1.8572822476451631 0.0 8 0.0 0.0 0.0 2.539209629786025 0.0 9 0.0 0.0 0.0 2.7557738140232804 0.0 10 0.0 0.0 0.0 3.1623149646937385 0.0 11 0.0 0.0 0.0 3.6679065346341955 0.0 12 0.0 0.0 0.0 4.061588508066093 0.0 13 0.0 0.0 0.0 4.242746511730958 0.0 14 0.0 0.0 0.0 4.317555644179615 0.0 15 0.0 0.0 0.0 4.42729308237085 0.0 16 0.0 0.0 0.0 4.671009245574662 0.0 17 0.0 0.0 0.0 4.953302940494157 0.0 18 0.0 0.0 0.0 5.3171394586460154 0.0 19 0.0 0.0 0.0 5.498297462310881 0.0 20 0.0 0.0 0.0 5.68523340709983 0.0 21 0.0 0.0 0.0 5.920912584529541 0.0 22 0.0 0.0 0.0 6.181832241606563 0.0 23 0.0 0.0 0.0 6.445010943333602 0.0 24 0.0 0.0 0.0 6.660228389414117 0.0 25 0.0 0.0 0.0 6.830829703656785 0.0 26 0.0 0.0 0.0 7.00060559773887 0.0 27 0.0 0.0 0.0 7.177636500600819 0.0 28 0.0 0.0 0.0 7.349280450835803 0.0 29 0.0 0.0 0.0 7.537954122278611 0.0 30 0.0 0.0 0.0 7.760643792970722 0.0 31 0.0 0.0 0.0 7.976252227548354 0.0 32 0.0 0.0 0.0 8.178393280558575 0.0 33 0.0 0.0 0.0 8.382315503389002 0.0 34 0.0 0.0 0.0 8.588974645699256 0.0 35 0.0 0.0 0.0 8.828129276436687 0.0 36 0.0 0.0 0.0 9.06267893154139 0.0 37 0.0 0.0 0.0 9.290798998026812 0.0 38 0.0 0.0 0.0 9.523350267479575 0.0 39 0.0 0.0 0.0 9.749428505146712 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AATCTCG 20 7.034762E-4 45.000004 18 TTGCGAT 20 7.034762E-4 45.000004 27 CATACGT 40 6.8193913E-9 45.000004 32 GTACGAC 20 7.034762E-4 45.000004 36 TTAGGCG 25 3.8920298E-5 45.0 40 TAAGTCG 35 1.2126475E-7 45.0 1 CGACGGT 330 0.0 44.318184 28 CGGTCTA 335 0.0 43.656715 31 CGTAAGG 430 0.0 42.906975 2 AACGGGA 710 0.0 41.830986 4 TCACGAC 365 0.0 41.301373 25 GAGCGTA 60 3.6379788E-12 41.250004 9 CGTATGG 110 0.0 40.909092 2 AATACGG 210 0.0 40.714287 2 TACGGGT 100 0.0 40.5 4 TGATTCG 100 0.0 40.5 15 AGGGCGC 295 0.0 40.42373 6 TACGGGA 735 0.0 40.408165 4 TAATACG 45 1.9297659E-8 40.0 1 TATTGCG 210 0.0 39.642857 1 >>END_MODULE