SRR1547443_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547443_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1188064
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	21659	1.8230499367037467	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	2533	0.21320400247798096	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1847	0.1554630053599806	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	1726	0.1452783688420826	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCAAGATGGCTCGTATGCCGTCTT	1596	0.1343361973765723	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCAAGATGGCTCGTATGCCGTCT	1296	0.10908503245616397	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTATGCG	30	2.1655633E-6	45.000004	1
AGCGTAT	25	3.8908845E-5	45.000004	31
CGTTCCC	30	2.1655633E-6	45.000004	11
CCCACGT	25	3.8908845E-5	45.000004	14
TGTTGCG	30	2.1655633E-6	45.000004	1
TACGCTT	25	3.8908845E-5	45.000004	37
CTAAACG	25	3.8908845E-5	45.000004	1
ACTCACG	25	3.8908845E-5	45.000004	1
GCATACC	25	3.8908845E-5	45.000004	9
CGGGTAC	55	1.8189894E-12	45.0	6
CGAACTG	20	7.0333836E-4	45.0	25
ATTAGCG	40	6.8157533E-9	45.0	1
GATCGAC	20	7.0333836E-4	45.0	9
CGTGCAC	20	7.0333836E-4	45.0	18
ATTACGC	20	7.0333836E-4	45.0	27
TAGCGCA	20	7.0333836E-4	45.0	14
TGACCGT	20	7.0333836E-4	45.0	14
AGCGCAT	20	7.0333836E-4	45.0	20
TTACGCG	20	7.0333836E-4	45.0	34
TTACGCA	20	7.0333836E-4	45.0	28