##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547443_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1188064 Sequences flagged as poor quality 0 Sequence length 51 %GC 41 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.228631622538852 31.0 31.0 33.0 30.0 34.0 2 31.614988754814554 31.0 31.0 34.0 30.0 34.0 3 31.654447066824684 31.0 31.0 34.0 30.0 34.0 4 35.46616512241765 37.0 35.0 37.0 33.0 37.0 5 35.34574568373421 37.0 35.0 37.0 33.0 37.0 6 35.41206365987018 37.0 35.0 37.0 33.0 37.0 7 35.875868640073264 37.0 35.0 37.0 35.0 37.0 8 35.92229122336844 37.0 35.0 37.0 35.0 37.0 9 37.66389268591591 39.0 37.0 39.0 35.0 39.0 10 36.95360098445875 39.0 37.0 39.0 32.0 39.0 11 36.636625636329356 39.0 35.0 39.0 32.0 39.0 12 35.9637999299701 37.0 35.0 39.0 31.0 39.0 13 35.7082168974062 37.0 35.0 39.0 30.0 39.0 14 36.77795556468338 39.0 35.0 41.0 31.0 41.0 15 37.02744885797398 39.0 35.0 41.0 32.0 41.0 16 37.13722745575996 39.0 35.0 41.0 32.0 41.0 17 37.09865882646053 38.0 35.0 41.0 32.0 41.0 18 36.966894881083846 38.0 35.0 40.0 32.0 41.0 19 36.83254269130283 38.0 35.0 40.0 32.0 41.0 20 36.62313983085086 38.0 35.0 40.0 31.0 41.0 21 36.534245629865055 38.0 35.0 40.0 31.0 41.0 22 36.39738768281843 38.0 35.0 40.0 31.0 41.0 23 36.35349358283729 38.0 35.0 40.0 31.0 41.0 24 36.213957328898104 37.0 35.0 40.0 31.0 41.0 25 36.07108034583995 37.0 35.0 40.0 31.0 41.0 26 35.8813767608479 37.0 35.0 40.0 30.0 41.0 27 35.75448629030086 37.0 34.0 40.0 30.0 41.0 28 35.67310599428987 36.0 34.0 40.0 30.0 41.0 29 35.63421330837396 36.0 34.0 40.0 30.0 41.0 30 35.54245478358068 36.0 34.0 40.0 30.0 41.0 31 35.34171138928543 36.0 34.0 40.0 29.0 41.0 32 35.10647406200339 36.0 34.0 40.0 27.0 41.0 33 34.93682074366364 36.0 34.0 40.0 27.0 41.0 34 34.77626121151722 36.0 34.0 40.0 25.0 41.0 35 34.61242744498613 36.0 34.0 40.0 25.0 41.0 36 34.488072191397094 36.0 33.0 40.0 24.0 41.0 37 34.409017527675275 36.0 33.0 40.0 24.0 41.0 38 34.33103688016807 35.0 33.0 40.0 24.0 41.0 39 34.27851698225012 36.0 33.0 40.0 23.0 41.0 40 34.1382930549196 35.0 33.0 40.0 23.0 41.0 41 34.05379339833544 35.0 33.0 40.0 23.0 41.0 42 33.99675270019124 35.0 33.0 40.0 23.0 41.0 43 33.93454308858782 35.0 33.0 40.0 23.0 41.0 44 33.780282880383545 35.0 33.0 40.0 22.0 41.0 45 33.63344903978237 35.0 33.0 40.0 23.0 41.0 46 33.57356758558461 35.0 33.0 40.0 23.0 41.0 47 33.510914395184095 35.0 33.0 40.0 22.0 41.0 48 33.43935848573814 35.0 33.0 39.0 22.0 41.0 49 33.38543462305061 35.0 33.0 39.0 22.0 41.0 50 33.24755484553021 35.0 32.0 39.0 21.0 41.0 51 32.717604438818114 35.0 32.0 39.0 20.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 0.0 10 1.0 11 0.0 12 3.0 13 9.0 14 16.0 15 40.0 16 82.0 17 243.0 18 588.0 19 1189.0 20 2130.0 21 3465.0 22 5557.0 23 8236.0 24 12177.0 25 17940.0 26 22545.0 27 24938.0 28 26191.0 29 29417.0 30 34392.0 31 41467.0 32 50885.0 33 65167.0 34 105210.0 35 162571.0 36 112628.0 37 105345.0 38 134989.0 39 220489.0 40 153.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.08973927330514 24.981482479058368 28.256811080884532 15.67196716675196 2 33.498111212863954 25.316817949201393 28.708722762410105 12.476348075524552 3 26.439568912112478 25.8988573006168 34.933050744741024 12.728523042529696 4 24.53310596062165 27.348695019796914 33.654500094271015 14.46369892531042 5 21.62324588574353 31.47322029789641 32.80521924744795 14.098314568912112 6 19.62444784119374 41.09593422576562 29.548744848762354 9.730873084278288 7 84.84071565168206 4.030001750747434 9.335103159425755 1.7941794381447465 8 85.20820427182375 3.645426509009616 8.99345489805263 2.152914321114014 9 80.59010289007999 5.9533829827349365 10.909765803862419 2.546748323322649 10 44.51384773884235 27.449699679478545 16.958008996148354 11.078443585530746 11 37.53358404934414 24.909685000134672 23.809744256201686 13.7469866943195 12 33.87031338379077 25.239633555094677 26.456318851509682 14.43373420960487 13 20.16591698763703 38.51231920165917 26.68231677754734 14.639447033156463 14 15.307929539149406 40.9736344170011 27.92021305249549 15.798222991354002 15 14.384494438010073 29.51280402402564 41.3115791741859 14.791122363778383 16 15.00802987044469 26.78045963853799 41.62174764995825 16.589762841059066 17 15.70353112290247 27.988138686131386 28.124158294502656 28.18417189646349 18 19.229940474587227 30.52167223314569 31.83077679316939 18.41761049909769 19 24.353570178037547 33.09072575214803 24.607596897136855 17.948107172677567 20 26.579292024672075 29.80378161445848 25.002272604842833 18.614653756026613 21 20.390652355428664 33.87527944622512 27.620313383790773 18.113754814555445 22 20.97597435828373 30.902375629595713 25.290388396584696 22.831261615535865 23 18.184373905782852 35.27899170415062 25.022052684030488 21.514581706036036 24 17.97672515958736 31.70738276725833 34.4201154146578 15.895776658496514 25 16.90338230937054 33.05587914455787 31.752666523015595 18.288072023055996 26 15.695871602876613 39.2603428771514 26.53333490451693 18.51045061545506 27 16.187595954426698 38.87029654968083 28.006572036523288 16.93553545936919 28 14.477923748215584 35.3827739919735 34.067104129070486 16.072198130740432 29 15.377959436528672 31.847863414765538 33.67613192555283 19.098045223152962 30 17.168603711584563 36.810222344924185 29.10870121474937 16.912472728741886 31 24.400116492040834 34.986751555471756 23.806714116411236 16.80641783607617 32 24.992340479974143 34.82893177471921 24.51930199046516 15.659425754841491 33 22.799360977186414 35.336732701268616 23.62860923317262 18.23529708837234 34 18.904873811511838 34.96579308858782 25.44559889029547 20.68373420960487 35 18.55219920812347 33.750117838769626 28.202521076305654 19.49516187680125 36 25.295270288469307 32.789563525197295 25.085601449080187 16.82956473725321 37 19.060252646322084 37.23536779163412 26.839715705551214 16.86466385649258 38 18.60329073181243 38.0458460150295 24.492619926199264 18.858243326958817 39 18.418368034045304 36.37657567269103 26.29967745845342 18.905378834810247 40 22.18609435181943 33.10907493199019 25.221284375252512 19.483546340937863 41 17.434750989845664 31.1985717941121 27.025648449915156 24.341028766127078 42 19.925525897594742 32.32519460231099 24.155601045061545 23.593678455032727 43 19.906166671155763 33.33843968001724 24.738482101974306 22.016911546852693 44 18.411381878417323 36.304020658819724 25.95567242168772 19.32892504107523 45 17.05404759339564 40.14379696716675 22.3922280281197 20.40992741131791 46 20.775985132114094 37.65941902119751 24.001737280146525 17.56285856654187 47 19.54642174158968 33.884285695046735 25.769487165674576 20.799805397689013 48 19.75280792953915 32.25794233307296 28.928407897217657 19.060841840170227 49 18.762793923559673 31.887002720392164 28.262029654968085 21.088173701080077 50 17.622956339052443 36.22641541196434 27.6982553128451 18.45237293613812 51 16.57873649904382 37.19067322972499 25.256636006141083 20.973954265090097 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 2204.0 1 2136.5 2 2069.0 3 13835.5 4 25602.0 5 16415.5 6 7229.0 7 8425.5 8 9622.0 9 12746.5 10 15871.0 11 18417.5 12 20964.0 13 21375.5 14 21787.0 15 19963.0 16 18139.0 17 15769.0 18 13399.0 19 12042.0 20 10685.0 21 10494.5 22 10304.0 23 9755.0 24 9206.0 25 9242.5 26 9987.5 27 10696.0 28 13092.0 29 15488.0 30 18076.0 31 20664.0 32 24522.0 33 28380.0 34 31309.5 35 34239.0 36 35851.0 37 37463.0 38 43882.5 39 50302.0 40 60979.5 41 71657.0 42 86059.5 43 100462.0 44 102876.0 45 105290.0 46 107777.5 47 110265.0 48 107755.5 49 105246.0 50 95826.0 51 86406.0 52 73355.0 53 60304.0 54 52877.0 55 45450.0 56 41078.0 57 36706.0 58 31840.5 59 26975.0 60 24712.0 61 22449.0 62 19300.0 63 16151.0 64 13364.0 65 10577.0 66 8118.0 67 5659.0 68 4856.0 69 4053.0 70 3336.0 71 2619.0 72 1988.5 73 1358.0 74 1212.5 75 867.5 76 668.0 77 622.0 78 576.0 79 451.5 80 327.0 81 217.0 82 107.0 83 71.5 84 36.0 85 36.5 86 37.0 87 25.5 88 14.0 89 8.5 90 3.0 91 4.5 92 6.0 93 4.0 94 2.0 95 2.0 96 2.0 97 1.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1188064.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 25.095885380870968 #Duplication Level Percentage of deduplicated Percentage of total 1 75.9719839623493 19.065842016764854 2 8.705677813980248 4.369533851648792 3 3.698759947334708 2.784709670690045 4 2.193057843789642 2.2014691312545955 5 1.43229648512267 1.797237421103144 6 0.9643987598891235 1.4521464443778926 7 0.7209987503485246 1.2665871398948443 8 0.5289105551331101 1.0618782934682693 9 0.4197671320548514 0.9480985049434929 >10 3.660029687405501 19.979926526710432 >50 1.077304970468421 19.846634217423667 >100 0.6203590960532089 21.872152702693352 >500 0.004416576258866894 0.7399708160939531 >1k 0.0016986831764872672 0.7671687294865065 >5k 0.0 0.0 >10k+ 3.397366352974534E-4 1.8466445334461266 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 21659 1.8230499367037467 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 2533 0.21320400247798096 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1847 0.1554630053599806 No Hit GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT 1726 0.1452783688420826 No Hit CGTTTCTGTCTCTTATACACATCTGACGCAAGATGGCTCGTATGCCGTCTT 1596 0.1343361973765723 No Hit CGTTTTCTGTCTCTTATACACATCTGACGCAAGATGGCTCGTATGCCGTCT 1296 0.10908503245616397 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 8.417054973469443E-5 0.0 0.0 0.07474344816440866 0.0 2 8.417054973469443E-5 0.0 0.0 0.22145271635198105 0.0 3 8.417054973469443E-5 0.0 0.0 0.3731280469739004 0.0 4 8.417054973469443E-5 0.0 0.0 0.593318205079861 0.0 5 8.417054973469443E-5 0.0 0.0 1.080076494195599 0.0 6 8.417054973469443E-5 0.0 0.0 1.8966991677216043 0.0 7 8.417054973469443E-5 0.0 0.0 2.4540765480647506 0.0 8 8.417054973469443E-5 0.0 0.0 3.4017527675276753 0.0 9 8.417054973469443E-5 0.0 0.0 3.8694043418536377 0.0 10 8.417054973469443E-5 0.0 0.0 4.47905163358203 0.0 11 8.417054973469443E-5 0.0 0.0 5.09854687962938 0.0 12 8.417054973469443E-5 0.0 0.0 5.570743663641016 0.0 13 8.417054973469443E-5 0.0 0.0 5.803643574756915 0.0 14 8.417054973469443E-5 0.0 0.0 5.912812777762814 0.0 15 8.417054973469443E-5 0.0 0.0 6.032924152234223 0.0 16 8.417054973469443E-5 0.0 0.0 6.268601691491368 0.0 17 8.417054973469443E-5 0.0 0.0 6.528772860721308 0.0 18 8.417054973469443E-5 0.0 0.0 6.85316615939882 0.0 19 8.417054973469443E-5 0.0 0.0 7.026978344600964 0.0 20 8.417054973469443E-5 0.0 0.0 7.215352034907211 0.0 21 8.417054973469443E-5 0.0 0.0 7.460877528483314 0.0 22 8.417054973469443E-5 0.0 0.0 7.704719611064724 0.0 23 8.417054973469443E-5 0.0 0.0 7.983155789587093 0.0 24 8.417054973469443E-5 0.0 0.0 8.199642443504727 0.0 25 8.417054973469443E-5 0.0 0.0 8.380861637083525 0.0 26 8.417054973469443E-5 0.0 0.0 8.548866054353974 0.0 27 8.417054973469443E-5 0.0 0.0 8.723351603953995 0.0 28 8.417054973469443E-5 0.0 0.0 8.897921324103752 0.0 29 8.417054973469443E-5 0.0 0.0 9.089072642551242 0.0 30 8.417054973469443E-5 0.0 0.0 9.33198884908557 0.0 31 8.417054973469443E-5 0.0 0.0 9.547633797505858 0.0 32 8.417054973469443E-5 0.0 0.0 9.746276294879737 0.0 33 8.417054973469443E-5 0.0 0.0 9.960658685054003 0.0 34 8.417054973469443E-5 0.0 0.0 10.166287338055863 0.0 35 8.417054973469443E-5 0.0 0.0 10.410634443935681 0.0 36 8.417054973469443E-5 0.0 0.0 10.638652463166967 0.0 37 1.6834109946938885E-4 0.0 0.0 10.861451908314704 0.0 38 1.6834109946938885E-4 0.0 0.0 11.089469927545991 0.0 39 1.6834109946938885E-4 0.0 0.0 11.323127373609502 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTATGCG 30 2.1655633E-6 45.000004 1 AGCGTAT 25 3.8908845E-5 45.000004 31 CGTTCCC 30 2.1655633E-6 45.000004 11 CCCACGT 25 3.8908845E-5 45.000004 14 TGTTGCG 30 2.1655633E-6 45.000004 1 TACGCTT 25 3.8908845E-5 45.000004 37 CTAAACG 25 3.8908845E-5 45.000004 1 ACTCACG 25 3.8908845E-5 45.000004 1 GCATACC 25 3.8908845E-5 45.000004 9 CGGGTAC 55 1.8189894E-12 45.0 6 CGAACTG 20 7.0333836E-4 45.0 25 ATTAGCG 40 6.8157533E-9 45.0 1 GATCGAC 20 7.0333836E-4 45.0 9 CGTGCAC 20 7.0333836E-4 45.0 18 ATTACGC 20 7.0333836E-4 45.0 27 TAGCGCA 20 7.0333836E-4 45.0 14 TGACCGT 20 7.0333836E-4 45.0 14 AGCGCAT 20 7.0333836E-4 45.0 20 TTACGCG 20 7.0333836E-4 45.0 34 TTACGCA 20 7.0333836E-4 45.0 28 >>END_MODULE