SRR1547442_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547442_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	3124050
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	27589	0.8831164674060914	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	5421	0.17352475152446345	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3620	0.1158752260687249	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCCGCGA	30	2.1667038E-6	45.000004	34
TCCGATT	30	2.1667038E-6	45.000004	32
CTACGAT	30	2.1667038E-6	45.000004	33
CACTACG	30	2.1667038E-6	45.000004	1
AGCGTGA	45	3.8562575E-10	45.0	41
AACCGGT	40	6.8212103E-9	45.0	15
ACTATCG	35	1.2128294E-7	45.0	28
ACGCCGA	90	0.0	45.0	12
GACACGT	20	7.0351496E-4	45.0	9
ACCGCTC	90	0.0	45.0	18
TCGATTG	20	7.0351496E-4	45.0	1
CCGTCGC	40	6.8212103E-9	45.0	22
ATATCGT	20	7.0351496E-4	45.0	17
CCCGTAG	50	2.1827873E-11	45.0	45
CACTCGA	25	3.8923507E-5	45.0	23
CTACGCG	70	0.0	45.0	1
TATTACG	45	3.8562575E-10	45.0	1
GCGATCG	20	7.0351496E-4	45.0	9
ACTCGAT	20	7.0351496E-4	45.0	29
CCGACGG	20	7.0351496E-4	45.0	41