##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547442_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 3124050 Sequences flagged as poor quality 0 Sequence length 51 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.28883884700949 31.0 31.0 33.0 30.0 34.0 2 31.698420319777213 31.0 31.0 34.0 30.0 34.0 3 31.81461564315552 31.0 31.0 34.0 30.0 34.0 4 35.55338134792977 37.0 35.0 37.0 33.0 37.0 5 35.432710423968885 37.0 35.0 37.0 33.0 37.0 6 35.48362990349066 37.0 35.0 37.0 33.0 37.0 7 35.93292969062595 37.0 35.0 37.0 35.0 37.0 8 35.982017893439604 37.0 35.0 37.0 35.0 37.0 9 37.770538883820684 39.0 38.0 39.0 35.0 39.0 10 36.97518605656119 39.0 37.0 39.0 32.0 39.0 11 36.691257822378006 39.0 35.0 39.0 32.0 39.0 12 36.025004081240695 37.0 35.0 39.0 32.0 39.0 13 35.697777244282264 38.0 35.0 39.0 30.0 39.0 14 36.769947664089884 39.0 35.0 41.0 31.0 41.0 15 37.05333429362526 39.0 35.0 41.0 32.0 41.0 16 37.181955794561546 39.0 35.0 41.0 32.0 41.0 17 37.13549399017301 39.0 35.0 41.0 32.0 41.0 18 37.04561482690738 38.0 35.0 41.0 32.0 41.0 19 36.9737398569165 38.0 35.0 41.0 32.0 41.0 20 36.817458107264606 38.0 35.0 41.0 32.0 41.0 21 36.73155071141627 38.0 35.0 41.0 31.0 41.0 22 36.63200813047166 38.0 35.0 41.0 31.0 41.0 23 36.57623661593124 38.0 35.0 40.0 31.0 41.0 24 36.48941886333446 38.0 35.0 40.0 31.0 41.0 25 36.399703589891324 38.0 35.0 40.0 31.0 41.0 26 36.24866695475424 38.0 35.0 40.0 31.0 41.0 27 36.16305596901458 38.0 35.0 40.0 30.0 41.0 28 36.12403002512764 38.0 35.0 40.0 30.0 41.0 29 36.15374913973848 38.0 35.0 40.0 30.0 41.0 30 36.09996735007442 38.0 35.0 40.0 30.0 41.0 31 35.97538131592004 38.0 35.0 40.0 30.0 41.0 32 35.8357174180951 38.0 34.0 40.0 30.0 41.0 33 35.74182071349691 38.0 35.0 40.0 30.0 41.0 34 35.66584657735952 38.0 35.0 40.0 29.0 41.0 35 35.555599942382486 38.0 34.0 40.0 29.0 41.0 36 35.46745058497783 38.0 34.0 40.0 28.0 41.0 37 35.41253501064323 38.0 34.0 40.0 28.0 41.0 38 35.34062771082409 37.0 34.0 40.0 27.0 41.0 39 35.28971591363774 37.0 34.0 40.0 27.0 41.0 40 35.20507706342728 37.0 34.0 40.0 27.0 41.0 41 35.147850386517504 37.0 34.0 40.0 27.0 41.0 42 35.11422896560554 37.0 34.0 40.0 27.0 41.0 43 35.089588514908534 37.0 34.0 40.0 27.0 41.0 44 34.96196827835662 37.0 34.0 40.0 26.0 41.0 45 34.83151870168531 37.0 34.0 40.0 26.0 41.0 46 34.819071077607596 37.0 34.0 40.0 26.0 41.0 47 34.785759190794 36.0 34.0 40.0 26.0 41.0 48 34.735293289159905 36.0 34.0 40.0 26.0 41.0 49 34.69176997807333 36.0 34.0 40.0 26.0 41.0 50 34.563090859621326 36.0 34.0 40.0 26.0 41.0 51 34.01579264096285 35.0 33.0 40.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 0.0 11 3.0 12 4.0 13 8.0 14 20.0 15 79.0 16 202.0 17 486.0 18 1208.0 19 2292.0 20 4170.0 21 6865.0 22 10600.0 23 16213.0 24 23642.0 25 33785.0 26 43709.0 27 51235.0 28 58475.0 29 67609.0 30 80802.0 31 99226.0 32 124003.0 33 161039.0 34 267802.0 35 413997.0 36 242428.0 37 273178.0 38 393281.0 39 747192.0 40 496.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.214145100110436 25.153246586962435 29.224276179958707 13.408332132968424 2 30.97850546566156 25.69036987244122 30.958531393543637 12.37259326835358 3 28.601942990669166 24.9488324450633 33.00401722123525 13.445207343032282 4 24.682479473760022 28.38171604167667 31.922984587314545 15.012819897248765 5 22.06779661016949 32.43369984475281 31.254237288135595 14.24426625694211 6 19.60147884957027 41.61687553016117 28.21596965477505 10.56567596549351 7 88.82719546742209 3.529809061954834 6.272114722875754 1.370880747747315 8 89.68412797490437 2.645636273427122 5.8260591219730795 1.8441766296954276 9 86.46161233014837 4.231942510523199 7.301803748339496 2.0046414109889406 10 43.7019573950481 28.60392759398857 15.52526368015877 12.168851330804564 11 36.287671452121444 26.25255677726029 23.271906659624523 14.18786511099374 12 33.29194475120437 25.46719802820057 26.23360701653303 15.007250204062034 13 20.328483859093165 37.15401482050543 27.045053696323684 15.47244762407772 14 15.76107936812791 39.734191194123014 28.731486371857045 15.773243065892032 15 14.355019926057523 28.93017077191466 42.294329476160755 14.420479825867064 16 15.55119156223492 25.459963829004018 41.74501048318689 17.243834125574175 17 16.395544245450616 26.377938893423604 28.555848978089337 28.670667883036444 18 19.88175605384037 27.988220419007376 33.52535970935164 18.604663817800613 19 24.976872969382693 29.64283542196828 26.605592099998397 18.77469950865063 20 26.30649317392487 28.102783246106817 27.291208527392328 18.29951505257598 21 20.687825098830046 31.649845553048127 29.05443254749444 18.60789680062739 22 21.76965797602471 27.626830556489175 27.494342280053136 23.10916918743298 23 17.87884316832317 32.15041372577264 27.65045373793633 22.320289367967863 24 17.759734959427668 28.960708055248794 36.379283302123845 16.900273683199693 25 16.3783230101951 29.95137721867448 34.31100654598998 19.35929322514044 26 15.827371520942366 36.84659336438278 27.959795777916487 19.366239336758376 27 16.23911269025784 36.687312943134714 29.709799779132855 17.36377458747459 28 14.723643987772284 33.25750228069333 35.33486980041933 16.68398393111506 29 15.471967478113346 29.37148893263552 34.623421520142124 20.53312206910901 30 17.561626734527298 33.312494998479536 31.31243097901762 17.813447287975546 31 24.235431571197644 31.022518845729103 26.434948224260175 18.307101358813078 32 24.517949456634817 31.76572077911685 27.064835710055856 16.651494054192476 33 23.61008946719803 31.221395304172468 25.911269025783838 19.257246202845664 34 18.180854979913892 31.55762551815752 28.04433347737712 22.217186024551463 35 18.014212320545443 30.34343240345065 30.064851714921335 21.57750356108257 36 24.135945327379524 30.144780013123988 27.308877898881263 18.410396760615228 37 18.519838030761353 34.49746322882156 29.39008658632224 17.592612154094844 38 18.590611545909958 35.70435812486996 25.349754325314894 20.35527600390519 39 18.98977289095885 33.907075751028316 27.85112274131336 19.252028616699477 40 21.298442726588885 30.490613146396505 26.627742833821483 21.58320129319313 41 16.7143611657944 28.855268001472446 29.020054096445318 25.41031673628783 42 20.047342392087195 30.692498519549943 26.12800691410189 23.132152174260977 43 19.710568012675854 30.498615579136057 27.1815431891295 22.609273219058593 44 18.445991581440758 33.24741921544149 27.977977305100747 20.328611898016995 45 16.813175205262397 37.38554120452618 25.535282725948687 20.266000864262736 46 20.833469374689905 34.10217506121861 26.134440870024488 18.929914694066994 47 18.83414157904003 31.223667995070503 28.214145100110432 21.728045325779036 48 19.576351210768074 30.093788511707558 30.078167762999954 20.251692514524418 49 19.32264208319329 28.76487252124646 31.103951601286788 20.80853379427346 50 18.410236711960437 33.36521502536771 28.534402458347337 19.690145804324516 51 16.839807301419633 34.650213664954144 26.453609897408814 22.05636913621741 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 4599.0 1 5079.5 2 5560.0 3 20952.0 4 36344.0 5 23901.0 6 11458.0 7 13259.5 8 15061.0 9 18789.5 10 22518.0 11 24832.5 12 27147.0 13 27678.0 14 28209.0 15 26494.5 16 24780.0 17 21975.5 18 19171.0 19 19640.0 20 20109.0 21 18357.0 22 16605.0 23 18312.0 24 20019.0 25 23715.5 26 32929.0 27 38446.0 28 49274.5 29 60103.0 30 69109.0 31 78115.0 32 90809.5 33 103504.0 34 113247.5 35 122991.0 36 125036.5 37 127082.0 38 144125.5 39 161169.0 40 193755.5 41 226342.0 42 259300.5 43 292259.0 44 292089.0 45 291919.0 46 290415.5 47 288912.0 48 277055.5 49 265199.0 50 247628.0 51 230057.0 52 199222.5 53 168388.0 54 143710.0 55 119032.0 56 105293.0 57 91554.0 58 78366.5 59 65179.0 60 55037.5 61 44896.0 62 37292.5 63 29689.0 64 23176.0 65 16663.0 66 13062.5 67 9462.0 68 7601.0 69 5740.0 70 4570.5 71 3401.0 72 2826.0 73 2251.0 74 1625.0 75 939.5 76 880.0 77 635.5 78 391.0 79 305.0 80 219.0 81 175.0 82 131.0 83 82.5 84 34.0 85 27.0 86 20.0 87 17.0 88 14.0 89 12.0 90 10.0 91 7.5 92 5.0 93 3.5 94 2.0 95 1.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 3124050.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 16.00600887462913 #Duplication Level Percentage of deduplicated Percentage of total 1 76.45722762535041 12.237750639008981 2 9.422939171230674 3.016472959996172 3 3.5784652359411764 1.718308389720789 4 1.9521250999055717 1.2498292669389943 5 1.2044041873098366 0.9638852055360864 6 0.843315873709474 0.8098872815225675 7 0.6033911963730406 0.6760519390813983 8 0.46730884084965807 0.5983799563065823 9 0.36861675706034897 0.5310074776360459 >10 2.757056405674846 9.39804901919362 >50 0.7169025605417917 8.335887479589308 >100 1.6031347804066813 56.29153345455964 >500 0.02085938194829993 2.176705875383744 >1k 0.003847847155511638 0.9262288526338416 >5k 2.0251827134271777E-4 0.17572221635500998 >10k+ 2.0251827134271777E-4 0.8942999865372386 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 27589 0.8831164674060914 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 5421 0.17352475152446345 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 3620 0.1158752260687249 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 9.602919287463389E-5 0.0 0.0 0.0629311310638434 0.0 2 9.602919287463389E-5 0.0 0.0 0.2190425889470399 0.0 3 9.602919287463389E-5 0.0 0.0 0.3375746226852963 0.0 4 9.602919287463389E-5 0.0 0.0 0.5467262047662489 0.0 5 9.602919287463389E-5 0.0 0.0 0.9521614570829532 0.0 6 9.602919287463389E-5 0.0 0.0 1.4122693298762823 0.0 7 9.602919287463389E-5 0.0 0.0 1.6928666314559626 0.0 8 9.602919287463389E-5 0.0 0.0 2.3077095437012853 0.0 9 9.602919287463389E-5 0.0 0.0 2.521534546502137 0.0 10 9.602919287463389E-5 0.0 0.0 2.941534226404827 0.0 11 9.602919287463389E-5 0.0 0.0 3.4875882268209537 0.0 12 9.602919287463389E-5 0.0 0.0 3.8825562971143226 0.0 13 9.602919287463389E-5 0.0 0.0 4.039756085850098 0.0 14 9.602919287463389E-5 0.0 0.0 4.099198156239497 0.0 15 9.602919287463389E-5 0.0 0.0 4.184632128166963 0.0 16 9.602919287463389E-5 0.0 0.0 4.406651622093117 0.0 17 9.602919287463389E-5 0.0 0.0 4.6643939757686335 0.0 18 9.602919287463389E-5 0.0 0.0 4.984395256157872 0.0 19 9.602919287463389E-5 0.0 0.0 5.146460523999296 0.0 20 9.602919287463389E-5 0.0 0.0 5.3010355147964985 0.0 21 1.2803892383284518E-4 0.0 0.0 5.522830940605944 0.0 22 1.2803892383284518E-4 0.0 0.0 5.757302219874842 0.0 23 1.2803892383284518E-4 0.0 0.0 6.02970503032922 0.0 24 1.2803892383284518E-4 0.0 0.0 6.2263087978745535 0.0 25 1.2803892383284518E-4 0.0 0.0 6.3859733358941115 0.0 26 1.2803892383284518E-4 0.0 0.0 6.531969718794514 0.0 27 1.2803892383284518E-4 0.0 0.0 6.6808469774811545 0.0 28 1.2803892383284518E-4 0.0 0.0 6.835646036395064 0.0 29 1.2803892383284518E-4 0.0 0.0 7.012499799939182 0.0 30 1.2803892383284518E-4 0.0 0.0 7.225204462156496 0.0 31 1.2803892383284518E-4 0.0 0.0 7.433523791232535 0.0 32 1.2803892383284518E-4 0.0 0.0 7.62026856164274 0.0 33 1.2803892383284518E-4 0.0 0.0 7.804708631423953 0.0 34 1.2803892383284518E-4 0.0 0.0 7.996638978249388 0.0 35 1.2803892383284518E-4 0.0 0.0 8.216801907779965 0.0 36 1.2803892383284518E-4 0.0 0.0 8.42179222483635 0.0 37 1.2803892383284518E-4 0.0 0.0 8.634656935708456 0.0 38 1.2803892383284518E-4 0.0 0.0 8.845697091915943 0.0 39 1.2803892383284518E-4 0.0 0.0 9.055616907539893 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCCGCGA 30 2.1667038E-6 45.000004 34 TCCGATT 30 2.1667038E-6 45.000004 32 CTACGAT 30 2.1667038E-6 45.000004 33 CACTACG 30 2.1667038E-6 45.000004 1 AGCGTGA 45 3.8562575E-10 45.0 41 AACCGGT 40 6.8212103E-9 45.0 15 ACTATCG 35 1.2128294E-7 45.0 28 ACGCCGA 90 0.0 45.0 12 GACACGT 20 7.0351496E-4 45.0 9 ACCGCTC 90 0.0 45.0 18 TCGATTG 20 7.0351496E-4 45.0 1 CCGTCGC 40 6.8212103E-9 45.0 22 ATATCGT 20 7.0351496E-4 45.0 17 CCCGTAG 50 2.1827873E-11 45.0 45 CACTCGA 25 3.8923507E-5 45.0 23 CTACGCG 70 0.0 45.0 1 TATTACG 45 3.8562575E-10 45.0 1 GCGATCG 20 7.0351496E-4 45.0 9 ACTCGAT 20 7.0351496E-4 45.0 29 CCGACGG 20 7.0351496E-4 45.0 41 >>END_MODULE