SRR1547440_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547440_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1777154
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6546	0.36834174190869223	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	3444	0.1937929971178637	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	2372	0.1334718319290281	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGCGAA	20	7.034327E-4	45.000004	23
TCGTTGC	20	7.034327E-4	45.000004	25
CGAACCG	20	7.034327E-4	45.000004	41
GTCGATA	20	7.034327E-4	45.000004	43
CGTATCA	25	3.891668E-5	45.000004	10
GTTTCGA	40	6.8193913E-9	45.000004	21
ACGCATC	20	7.034327E-4	45.000004	33
CGTGCGT	35	1.2124292E-7	45.000004	17
TTAGCGA	20	7.034327E-4	45.000004	1
TGGCGTA	35	1.2124292E-7	45.000004	33
CAATTCG	20	7.034327E-4	45.000004	44
TGCGGAC	20	7.034327E-4	45.000004	17
CGTTCGA	25	3.891668E-5	45.000004	14
CGTTCCA	25	3.891668E-5	45.000004	41
TCTAGCG	45	3.8562575E-10	45.000004	1
ATCGTAC	25	3.891668E-5	45.000004	27
GAAACGC	25	3.891668E-5	45.000004	44
AACGCAT	20	7.034327E-4	45.000004	32
AGCGCGA	25	3.891668E-5	45.000004	1
TCGTCGT	20	7.034327E-4	45.000004	45