SRR1547439_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547439_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	821799
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7977	0.9706753111162219	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	1270	0.15453900527987988	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	915	0.11134109435518905	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CATACGG	30	2.164743E-6	45.000004	2
CGTAAGG	130	0.0	45.000004	2
TGCAGCG	30	2.164743E-6	45.000004	1
CGGACGG	30	2.164743E-6	45.000004	2
CGGGTTC	40	6.8102963E-9	45.0	6
AACGTAC	25	3.8898324E-5	45.0	11
CGGGTCA	50	2.1827873E-11	45.0	6
TTGGCCG	25	3.8898324E-5	45.0	36
TACCCGG	20	7.032112E-4	45.0	16
CGAACGG	25	3.8898324E-5	45.0	2
ACACGCG	20	7.032112E-4	45.0	36
GTTTACG	45	3.8380676E-10	45.0	1
CCGTGAC	20	7.032112E-4	45.0	21
TTGTACG	25	3.8898324E-5	45.0	1
TCGATAG	40	6.8102963E-9	45.0	1
CCGTATC	20	7.032112E-4	45.0	40
AGACGAG	25	3.8898324E-5	45.0	1
TCGTGCG	25	3.8898324E-5	45.0	1
ATATACG	20	7.032112E-4	45.0	1
CGGATCG	20	7.032112E-4	45.0	20