##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547439_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 821799 Sequences flagged as poor quality 0 Sequence length 51 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.167901153445065 31.0 31.0 33.0 30.0 34.0 2 31.571398845703147 31.0 31.0 34.0 30.0 34.0 3 31.639447115413866 31.0 31.0 34.0 30.0 34.0 4 35.4309837320318 37.0 35.0 37.0 33.0 37.0 5 35.31151291252484 37.0 35.0 37.0 33.0 37.0 6 35.37887975040125 37.0 35.0 37.0 33.0 37.0 7 35.863528673069695 37.0 35.0 37.0 35.0 37.0 8 35.90689329142528 37.0 35.0 37.0 35.0 37.0 9 37.66322665274599 39.0 37.0 39.0 35.0 39.0 10 36.795550980227524 39.0 37.0 39.0 32.0 39.0 11 36.53267648171877 39.0 35.0 39.0 32.0 39.0 12 35.94974196853489 37.0 35.0 39.0 31.0 39.0 13 35.720805209059634 37.0 35.0 39.0 30.0 39.0 14 36.78611801669265 39.0 35.0 41.0 31.0 41.0 15 37.01721832224181 39.0 35.0 41.0 32.0 41.0 16 37.1118339155925 39.0 35.0 41.0 32.0 41.0 17 37.0743308278545 38.0 35.0 41.0 32.0 41.0 18 36.95288628971318 38.0 35.0 40.0 32.0 41.0 19 36.83980876102307 38.0 35.0 40.0 31.0 41.0 20 36.65141232831873 38.0 35.0 40.0 31.0 41.0 21 36.56261689293854 38.0 35.0 40.0 31.0 41.0 22 36.45155810605756 38.0 35.0 40.0 31.0 41.0 23 36.38838329080468 38.0 35.0 40.0 31.0 41.0 24 36.290400694087 38.0 35.0 40.0 31.0 41.0 25 36.183120203358726 38.0 35.0 40.0 30.0 41.0 26 36.01865541330666 37.0 35.0 40.0 30.0 41.0 27 35.90650755233336 37.0 34.0 40.0 30.0 41.0 28 35.8239837235139 37.0 34.0 40.0 30.0 41.0 29 35.829719919347674 37.0 35.0 40.0 30.0 41.0 30 35.74789334131582 37.0 35.0 40.0 30.0 41.0 31 35.60751473292131 37.0 34.0 40.0 29.0 41.0 32 35.39332732213108 37.0 34.0 40.0 29.0 41.0 33 35.2384427335638 37.0 34.0 40.0 27.0 41.0 34 35.07275745042279 37.0 34.0 40.0 26.0 41.0 35 34.91730946374965 37.0 34.0 40.0 25.0 41.0 36 34.814833067453236 37.0 34.0 40.0 24.0 41.0 37 34.75414547839557 37.0 34.0 40.0 24.0 41.0 38 34.67439483377322 37.0 34.0 40.0 24.0 41.0 39 34.618839886638945 37.0 34.0 40.0 24.0 41.0 40 34.52388114368598 37.0 33.0 40.0 23.0 41.0 41 34.47638047746469 37.0 34.0 40.0 23.0 41.0 42 34.43226871777649 37.0 33.0 40.0 23.0 41.0 43 34.387770002153815 37.0 33.0 40.0 23.0 41.0 44 34.28084969682367 36.0 33.0 40.0 23.0 41.0 45 34.144885793241414 36.0 33.0 40.0 23.0 41.0 46 34.112632164312686 36.0 33.0 40.0 23.0 41.0 47 34.07367008234374 36.0 33.0 40.0 23.0 41.0 48 34.006202246534734 36.0 33.0 40.0 23.0 41.0 49 33.9503540403432 36.0 33.0 40.0 23.0 41.0 50 33.83418086417725 36.0 33.0 40.0 23.0 41.0 51 33.29328461095718 35.0 32.0 39.0 21.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 1.0 10 1.0 11 1.0 12 2.0 13 3.0 14 6.0 15 27.0 16 79.0 17 194.0 18 454.0 19 854.0 20 1598.0 21 2443.0 22 3807.0 23 5653.0 24 8380.0 25 12032.0 26 15217.0 27 16548.0 28 17481.0 29 19445.0 30 22906.0 31 27612.0 32 33918.0 33 43102.0 34 68105.0 35 101323.0 36 67089.0 37 75577.0 38 103550.0 39 174289.0 40 101.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 30.910478109610747 25.030938222120007 29.155791136275415 14.902792531993834 2 33.251561513216735 25.717845847950656 27.784774622505015 13.245818016327593 3 27.293048543500298 24.821032880302848 34.55127105289736 13.334647523299491 4 24.057099120344514 27.725271021259456 34.006125585453375 14.211504272942655 5 20.918740470601694 32.380180555099244 33.281495840223705 13.419583134075364 6 19.46668224225145 40.90002543200953 30.166500567657057 9.466791758081964 7 86.80054368525637 3.4529124518282455 8.335979965904071 1.410563897011313 8 87.87039166511519 2.629231722112098 7.691905198229737 1.8084714145429721 9 83.603654908317 4.503412634963051 9.5059740885545 2.386958368165452 10 42.90927586916022 22.50939706667932 20.040666878397275 14.540660185763185 11 35.51111646521838 26.644471458349305 22.103945125267856 15.740466951164459 12 30.668934861200853 24.202876859183327 28.159197078604382 16.96899120101144 13 19.916913989917244 35.35876777654877 29.875675195516177 14.848643038017812 14 17.3499846069416 37.42861697325015 29.977403233637425 15.243995186170828 15 15.788167179565807 28.03313218925796 41.31557716667945 14.863123464496795 16 16.495152707657226 25.14045405263331 41.05772822794868 17.30666501176078 17 17.294374901892066 26.127800106838777 29.22819326867032 27.349631722598833 18 20.27284043908547 27.45281997179359 33.61929133522917 18.655048253891767 19 24.43967442160431 30.246812176700143 27.162481336677217 18.15103206501833 20 25.37104571799187 28.223933102863352 27.402807742525848 19.00221343661893 21 21.122804968124807 31.420821879802723 29.26153475484881 18.194838397223652 22 21.576443874962127 27.968639533511237 27.39149110670614 23.063425484820495 23 18.065122980193454 32.4838555413185 27.40597153318512 22.045049945302928 24 18.322971918924214 29.024372139659455 35.28928606630088 17.36336987511545 25 17.340128182195404 29.904392679961887 33.70045473406515 19.055024403777566 26 17.295956797221702 35.30352312426761 28.738414137763613 18.662105940747068 27 18.210170613495514 34.850127585942545 29.201544416578752 17.73815738398319 28 16.864829477767678 31.533501500975298 34.725522907669635 16.87614611358739 29 16.44550553115786 28.860098393889505 34.48604829161388 20.20834778333875 30 18.079238353904056 32.64691244452719 30.71979888026147 18.554050321307276 31 23.901708325271752 30.09945254253169 26.786963722272723 19.211875409923838 32 23.941012340000416 29.55880939256436 27.96730100669385 18.532877260741373 33 22.881142469143914 31.04858974031363 26.591052069910038 19.479215720632418 34 17.93917977510316 31.773097801287175 28.19850109333304 22.089221330276626 35 18.655169938147893 30.526442597277438 29.79244316432607 21.0259443002486 36 24.587885845565644 29.900863836534235 26.92288503636534 18.58836528153478 37 18.31749612739855 34.46828239021951 28.9724129622937 18.241808520088245 38 18.594084441572694 35.717127910839515 25.572189793367965 20.11659785421983 39 18.74558134044943 33.62379365270583 28.34659083303825 19.284034173806493 40 20.543344540453322 31.8141053956016 26.52923646779809 21.11331359614699 41 17.562323633881277 29.097747746103366 28.477279724117455 24.8626488958979 42 20.137405862017353 30.563921348164207 26.542256683203558 22.75641610661488 43 19.49211425178176 30.484096476145627 28.180005086401906 21.843784185670707 44 18.541030105901807 33.0173193201744 28.330406826973505 20.11124374695029 45 17.48590592103422 36.482156829102976 25.51694514108681 20.51499210877599 46 20.957071011281347 34.09422498688852 25.834784418087636 19.113919583742497 47 19.751910138610537 31.180008736929587 27.136197537354022 21.93188358710585 48 20.41204722809349 29.7455947257176 29.147881659627235 20.69447638656168 49 19.31250828973995 29.0781565808671 30.04773673367819 21.561598395714768 50 18.549061266806117 33.20641665419403 28.366060314018394 19.878461764981463 51 17.570719847553963 34.17855217638376 26.30034838202529 21.950379594036985 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1069.0 1 1050.0 2 1031.0 3 6008.0 4 10985.0 5 7583.5 6 4182.0 7 4610.5 8 5039.0 9 6182.5 10 7326.0 11 8075.0 12 8824.0 13 9278.5 14 9733.0 15 9292.0 16 8851.0 17 8164.0 18 7477.0 19 7014.5 20 6552.0 21 6024.0 22 5496.0 23 5860.0 24 6224.0 25 6396.0 26 7916.5 27 9265.0 28 10355.0 29 11445.0 30 13057.5 31 14670.0 32 16771.5 33 18873.0 34 21838.5 35 24804.0 36 27287.5 37 29771.0 38 33228.0 39 36685.0 40 46364.0 41 56043.0 42 64631.5 43 73220.0 44 77384.5 45 81549.0 46 80976.5 47 80404.0 48 75254.0 49 70104.0 50 65799.0 51 61494.0 52 54616.0 53 47738.0 54 41738.0 55 35738.0 56 32419.0 57 29100.0 58 24420.5 59 19741.0 60 16183.5 61 12626.0 62 10665.5 63 8705.0 64 6826.5 65 4948.0 66 3647.5 67 2347.0 68 1884.0 69 1421.0 70 1047.0 71 673.0 72 512.5 73 352.0 74 321.0 75 228.0 76 166.0 77 144.0 78 122.0 79 105.0 80 88.0 81 60.5 82 33.0 83 20.0 84 7.0 85 8.0 86 9.0 87 7.5 88 6.0 89 5.0 90 4.0 91 2.5 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 821799.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 28.668872010204772 #Duplication Level Percentage of deduplicated Percentage of total 1 75.80977410585533 21.733807109633023 2 8.38841915249878 4.809730301018758 3 3.5315541359548988 3.0373702056240086 4 1.9106877451620985 2.191090496700758 5 1.2396314449455716 1.77694176174849 6 0.9009021302460242 1.5496708719446457 7 0.7192838143167849 1.443473892816186 8 0.5924496366190438 1.3587890243778953 9 0.4907804837266451 1.2663110585759019 >10 5.2283403842820135 34.020824432085654 >50 1.0658393813746718 20.761131961438643 >100 0.12062056628104942 4.730152391256519 >500 8.585093685483943E-4 0.18274777690808158 >1k 4.2925468427419715E-4 0.15628934456112029 >5k 4.2925468427419715E-4 0.9816693713102808 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 7977 0.9706753111162219 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 1270 0.15453900527987988 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 915 0.11134109435518905 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.03674864535001868 0.0 2 0.0 0.0 0.0 0.12314446719940034 0.0 3 0.0 0.0 0.0 0.21720639718471305 0.0 4 0.0 0.0 0.0 0.41689026148729796 0.0 5 0.0 0.0 0.0 0.7776840809005608 0.0 6 0.0 0.0 0.0 1.4385512759202677 0.0 7 0.0 0.0 0.0 1.831713107463017 0.0 8 0.0 0.0 0.0 2.6488228873483664 0.0 9 0.0 0.0 0.0 3.0243405017528615 0.0 10 0.0 0.0 0.0 3.585304922493213 0.0 11 0.0 0.0 0.0 4.137508076792501 0.0 12 0.0 0.0 0.0 4.587618140202166 0.0 13 0.0 0.0 0.0 4.811882224242181 0.0 14 0.0 0.0 0.0 4.905944154227494 0.0 15 0.0 0.0 0.0 5.003048190615954 0.0 16 0.0 0.0 0.0 5.19676952636837 0.0 17 0.0 0.0 0.0 5.431985193459715 0.0 18 0.0 0.0 0.0 5.744835415959377 0.0 19 0.0 0.0 0.0 5.921399271598043 0.0 20 0.0 0.0 0.0 6.094190915296807 0.0 21 0.0 0.0 0.0 6.349484484648922 0.0 22 0.0 0.0 0.0 6.614391110234984 0.0 23 0.0 0.0 0.0 6.922252278233485 0.0 24 0.0 0.0 0.0 7.142014044796842 0.0 25 0.0 0.0 0.0 7.345226752527077 0.0 26 0.0 0.0 0.0 7.529700084813927 0.0 27 0.0 0.0 0.0 7.722569630773462 0.0 28 0.0 0.0 0.0 7.9159259137575 0.0 29 0.0 0.0 0.0 8.138973155236256 0.0 30 0.0 0.0 0.0 8.409233888091856 0.0 31 0.0 0.0 0.0 8.674748934958549 0.0 32 0.0 0.0 0.0 8.913980182502048 0.0 33 0.0 0.0 0.0 9.151994587484287 0.0 34 0.0 0.0 0.0 9.387210254575633 0.0 35 0.0 0.0 0.0 9.65248193293007 0.0 36 0.0 0.0 0.0 9.897432340511488 0.0 37 0.0 0.0 0.0 10.174142338941762 0.0 38 0.0 0.0 0.0 10.440387491345207 0.0 39 0.0 0.0 0.0 10.720261280434753 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CATACGG 30 2.164743E-6 45.000004 2 CGTAAGG 130 0.0 45.000004 2 TGCAGCG 30 2.164743E-6 45.000004 1 CGGACGG 30 2.164743E-6 45.000004 2 CGGGTTC 40 6.8102963E-9 45.0 6 AACGTAC 25 3.8898324E-5 45.0 11 CGGGTCA 50 2.1827873E-11 45.0 6 TTGGCCG 25 3.8898324E-5 45.0 36 TACCCGG 20 7.032112E-4 45.0 16 CGAACGG 25 3.8898324E-5 45.0 2 ACACGCG 20 7.032112E-4 45.0 36 GTTTACG 45 3.8380676E-10 45.0 1 CCGTGAC 20 7.032112E-4 45.0 21 TTGTACG 25 3.8898324E-5 45.0 1 TCGATAG 40 6.8102963E-9 45.0 1 CCGTATC 20 7.032112E-4 45.0 40 AGACGAG 25 3.8898324E-5 45.0 1 TCGTGCG 25 3.8898324E-5 45.0 1 ATATACG 20 7.032112E-4 45.0 1 CGGATCG 20 7.032112E-4 45.0 20 >>END_MODULE