SRR1547437_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547437_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1524708
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6533	0.42847548514207306	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	2263	0.1484218617597599	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAATACG	45	3.8562575E-10	45.0	1
CGAACGT	20	7.034013E-4	45.0	37
ACGTTAG	45	3.8562575E-10	45.0	1
GCGCGAA	25	3.8914077E-5	45.0	34
CGACAGT	25	3.8914077E-5	45.0	12
TTAACGC	35	1.2122837E-7	45.0	36
CACCGTA	20	7.034013E-4	45.0	17
CCGTTAG	45	3.8562575E-10	45.0	1
TCACGAC	215	0.0	41.860466	25
TACGGGA	510	0.0	41.47059	4
CGAGGGA	935	0.0	40.18717	4
TTGGGAC	1165	0.0	40.171673	5
TCGTACA	45	1.9290383E-8	40.0	34
ATACCGG	90	0.0	40.0	2
CACGACG	220	0.0	38.863636	26
GCTACGA	180	0.0	38.75	10
CGTTTTT	3360	0.0	38.70536	1
CGGTTAT	35	6.249633E-6	38.571426	22
CGGTCTA	235	0.0	38.29787	31
ATAGGGA	2110	0.0	38.28199	4