SRR1547435_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547435_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2368005
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	54877	2.3174359851436126	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCTGATTACCTCGTATGCCGTCTT	4785	0.20206883009115267	No Hit
CGTTCTGTCTCTTATACACATCTGACGCTGATTACCTCGTATGCCGTCTTC	3213	0.13568383512703733	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCTGATTACCTCGTATGCCGTCT	3165	0.13365681238004143	No Hit
CGCTGTCTCTTATACACATCTGACGCTGATTACCTCGTATGCCGTCTTCTG	2427	0.10249133764497964	TruSeq Adapter, Index 10 (95% over 22bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	25830	43.81533	1
TATCGCG	95	40.263157	1
TAGGGAC	2680	39.794773	5
CGGTCTA	230	39.130432	31
GTTTTTT	29705	38.46322	2
TAAGGGA	3305	38.39637	4
TAGGGAT	3510	38.141026	5
GGGCGAT	3980	38.103016	7
CACGACC	325	38.07692	27
ATAGGGA	3370	37.922848	4
GGCGATA	870	37.75862	8
AGGGCGA	2060	37.682037	6
AGGGATT	4120	37.627426	6
TTAGGGA	3040	37.598682	4
TAGCGGG	1235	37.348175	3
AAGGGAT	3385	37.090103	5
TAGGGCG	910	37.08791	5
CGTAAGG	390	36.923077	2
TACGGCG	470	36.861702	15
ACGGGAT	1115	36.72646	5