##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547435_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2368005 Sequences flagged as poor quality 0 Sequence length 51 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.292907743015746 31.0 31.0 33.0 30.0 34.0 2 31.693583417264744 31.0 31.0 34.0 30.0 34.0 3 31.661379093371846 31.0 31.0 34.0 30.0 34.0 4 35.53101408147364 37.0 35.0 37.0 33.0 37.0 5 35.45260335176657 37.0 35.0 37.0 33.0 37.0 6 35.50839926435966 37.0 35.0 37.0 33.0 37.0 7 35.927375575642785 37.0 35.0 37.0 35.0 37.0 8 35.96702287368481 37.0 35.0 37.0 35.0 37.0 9 37.69739886528956 39.0 37.0 39.0 35.0 39.0 10 37.05917850680214 39.0 37.0 39.0 33.0 39.0 11 36.80482135806301 39.0 37.0 39.0 32.0 39.0 12 36.55270449175572 39.0 35.0 39.0 32.0 39.0 13 36.49983889392126 39.0 35.0 39.0 32.0 39.0 14 37.611057409084864 40.0 36.0 41.0 32.0 41.0 15 37.679446200493665 40.0 36.0 41.0 32.0 41.0 16 37.68233597479735 40.0 36.0 41.0 32.0 41.0 17 37.58261574616608 40.0 36.0 41.0 32.0 41.0 18 37.34922392478057 39.0 36.0 41.0 32.0 41.0 19 37.17740165244584 38.0 36.0 41.0 32.0 41.0 20 36.934122605315444 38.0 35.0 41.0 32.0 41.0 21 36.87825828070464 38.0 35.0 41.0 31.0 41.0 22 36.81582724698639 38.0 35.0 40.0 31.0 41.0 23 36.7328050405299 38.0 35.0 40.0 31.0 41.0 24 36.630000358951946 38.0 35.0 40.0 31.0 41.0 25 36.528650488491365 38.0 35.0 40.0 31.0 41.0 26 36.40457178088729 38.0 35.0 40.0 31.0 41.0 27 36.31373117877707 38.0 35.0 40.0 30.0 41.0 28 36.181944294881134 38.0 35.0 40.0 30.0 41.0 29 36.15859045905731 38.0 35.0 40.0 30.0 41.0 30 36.014273618510096 38.0 35.0 40.0 30.0 41.0 31 35.81591381774954 38.0 35.0 40.0 29.0 41.0 32 35.555488691958 38.0 34.0 40.0 27.0 41.0 33 35.2552410151161 38.0 34.0 40.0 25.0 41.0 34 34.87807120339695 38.0 34.0 40.0 23.0 41.0 35 34.64631029072996 38.0 34.0 40.0 22.0 41.0 36 34.566738668203826 38.0 34.0 40.0 22.0 41.0 37 34.51657576736535 38.0 34.0 40.0 21.0 41.0 38 34.39434038357182 38.0 33.0 40.0 21.0 41.0 39 34.30382494969394 38.0 33.0 40.0 20.0 41.0 40 34.224670978312965 38.0 33.0 40.0 20.0 41.0 41 34.09674557275006 38.0 33.0 40.0 18.0 41.0 42 34.04042516802118 38.0 33.0 40.0 18.0 41.0 43 33.99843412492795 38.0 33.0 40.0 18.0 41.0 44 33.860806037149416 37.0 33.0 40.0 18.0 41.0 45 33.75078937755621 37.0 33.0 40.0 18.0 41.0 46 33.731538573609434 37.0 33.0 40.0 18.0 41.0 47 33.69021011357662 37.0 33.0 40.0 18.0 41.0 48 33.60859584333648 37.0 33.0 40.0 18.0 41.0 49 33.54385907124352 37.0 33.0 40.0 18.0 41.0 50 33.46173720072382 36.0 32.0 40.0 18.0 41.0 51 32.932001410469994 36.0 31.0 40.0 18.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 4.0 10 2.0 11 2.0 12 4.0 13 11.0 14 26.0 15 56.0 16 171.0 17 477.0 18 1115.0 19 2275.0 20 4058.0 21 6529.0 22 10152.0 23 15480.0 24 24238.0 25 38260.0 26 54255.0 27 62241.0 28 61632.0 29 60999.0 30 64703.0 31 74778.0 32 88554.0 33 110915.0 34 159613.0 35 205743.0 36 194665.0 37 232878.0 38 335166.0 39 558761.0 40 242.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 29.67713328308006 21.662961015707317 26.702857468628654 21.95704823258397 2 37.881803459029854 22.85856659931039 27.041539185939218 12.218090755720533 3 26.28330598964107 23.754130586717512 37.490545839219095 12.47201758442233 4 23.58791472146385 25.805730984520725 36.98813980544804 13.618214488567382 5 21.03373937132734 29.444067896816094 35.84692599888936 13.675266732967204 6 19.78695146336262 37.52310489209271 32.572186291836374 10.117757352708292 7 81.38707477391306 2.6694622688718987 14.170873794607697 1.7725891626073427 8 81.98145696482905 1.9921410638913346 13.919522973980206 2.1068789972994146 9 76.37935730710028 4.742050798034633 15.937466348255178 2.94112554660991 10 32.725437657437375 32.83329215943379 21.87714975263988 12.564120430488956 11 25.2518470189041 21.7197176526232 35.1818513896719 17.846583938800805 12 25.174862384158818 20.390328567718395 35.350769951921556 19.084039096201234 13 22.60776476401021 21.944379340415242 36.499922930905974 18.94793296466857 14 18.160561316382356 25.189642758355664 36.8369576922346 19.81283823302738 15 18.184716670784056 24.773765258097004 39.498987544367516 17.54253052675142 16 22.479808953106094 23.43753497142109 37.33112894609597 16.75152712937684 17 21.573391948074434 23.824527397535057 34.98810179877154 19.61397885561897 18 21.385554506852813 24.40412921425419 36.35114790720459 17.859168371688405 19 22.91908167423633 26.31565389431188 32.82729555047392 17.93796888097787 20 23.869248586890652 25.7010437055665 32.651958082858776 17.77774962468407 21 22.91713911077046 25.724861222843703 34.56842363086226 16.789576035523574 22 21.46942257300977 22.926091794569693 35.32277170022867 20.281713932191867 23 20.278926775914748 25.397708197406676 34.966775830287524 19.356589196391056 24 20.486316540716764 24.97680536992109 36.41630824259239 18.120569846769747 25 21.651221175630965 25.507125196103893 33.507741748856105 19.333911879409037 26 19.807179461192014 26.830897738813896 33.28164425328494 20.08027854670915 27 18.9092506139134 26.118019176479777 34.730163154216314 20.24256705539051 28 18.757477285732083 26.657122767899562 35.24853199211995 19.336867954248408 29 20.122930483677187 25.343612027846223 34.63877821203925 19.894679276437337 30 20.697802580653335 24.635632103817347 36.035354655078855 18.631210660450463 31 22.23850878693246 25.424777397007187 33.3287725321526 19.007941283907762 32 22.980568030895203 25.688036976273278 33.02053838568753 18.31085660714399 33 22.692646341540666 25.874776446840276 32.41293831727551 19.01963889434355 34 19.670228736848106 27.276716054231304 34.10833169693476 18.944723511985828 35 19.645144330354032 28.19225466162445 32.58785348848503 19.574747519536487 36 20.74214370324387 29.122953709979498 30.567038498651815 19.567864088124814 37 20.758486574141525 29.214887637483873 30.242714859132473 19.783910929242126 38 20.16389323502273 28.99440668410751 30.571557070191997 20.270143010677767 39 19.955109892082152 28.334821928163155 29.651373202336988 22.0586949774177 40 21.307007375406727 26.59082223221657 31.123794079826688 20.978376312550015 41 19.036150683803456 27.594325180901226 31.0253567876757 22.34416734761962 42 20.16874964368741 28.530767460372765 29.863492686881997 21.436990209057836 43 20.186232714880248 27.22730737477328 30.603060382051556 21.983399528294914 44 20.845395174418975 27.851081395520698 30.03747880599914 21.26604462406118 45 20.341891169993307 27.717973568467976 30.11019824704762 21.8299370144911 46 20.670311084647203 28.39656166266541 29.825697158578635 21.107430094108754 47 20.3032510488787 27.885034026532885 30.827975447686978 20.98373947690144 48 19.74670661590664 27.232206013078518 31.728480303039902 21.29260706797494 49 20.796957776693883 26.697916600682852 31.10191912601536 21.403206496607904 50 19.273016737718038 26.938329944404675 32.473284473639204 21.315368844238083 51 18.704901383231874 27.26147115398827 32.266232545961685 21.767394916818166 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1821.0 1 2580.5 2 3340.0 3 42691.5 4 82043.0 5 54548.0 6 27053.0 7 26451.5 8 25850.0 9 26830.0 10 27810.0 11 27948.0 12 28086.0 13 27511.0 14 26936.0 15 25745.5 16 24555.0 17 22580.0 18 20605.0 19 19277.0 20 17949.0 21 17400.5 22 16852.0 23 17150.5 24 17449.0 25 18598.5 26 22617.5 27 25487.0 28 28763.0 29 32039.0 30 37029.0 31 42019.0 32 46317.5 33 50616.0 34 57375.5 35 64135.0 36 72612.0 37 81089.0 38 86476.5 39 91864.0 40 101321.0 41 110778.0 42 124146.0 43 137514.0 44 156076.0 45 174638.0 46 180901.0 47 187164.0 48 183650.0 49 180136.0 50 166644.5 51 153153.0 52 144099.0 53 135045.0 54 127659.5 55 120274.0 56 114414.5 57 108555.0 58 103228.0 59 97901.0 60 88402.0 61 78903.0 62 69046.0 63 59189.0 64 48849.0 65 38509.0 66 30522.0 67 22535.0 68 18295.5 69 14056.0 70 11337.0 71 8618.0 72 7223.0 73 5828.0 74 4655.5 75 2878.5 76 2274.0 77 1687.5 78 1101.0 79 831.5 80 562.0 81 423.0 82 284.0 83 197.5 84 111.0 85 67.5 86 24.0 87 18.0 88 12.0 89 8.0 90 4.0 91 3.5 92 3.0 93 2.5 94 2.0 95 2.5 96 3.0 97 1.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2368005.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 26.735018943677392 #Duplication Level Percentage of deduplicated Percentage of total 1 72.34515586322354 19.341491124865748 2 7.426128688374499 3.9707538232375676 3 3.4688053613187413 2.782157311403587 4 2.2100437130983157 2.363422421441544 5 1.592735239814448 2.129090340435091 6 1.2503617757193057 2.005706745618345 7 1.0175429029904026 1.9042820151217028 8 0.854561175405588 1.8277367370399693 9 0.7380541005932747 1.7758701324737982 >10 8.617938995994958 49.2596459711924 >50 0.438146545226099 7.313209274402073 >100 0.03652176905770667 1.6693852510139278 >500 0.0022421667426046027 0.41117556311415937 >1k 0.001601547673289002 0.8963824235962642 >5k 0.0 0.0 >10k+ 1.601547673289002E-4 2.3496908650438115 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 54877 2.3174359851436126 No Hit CGTTTCTGTCTCTTATACACATCTGACGCTGATTACCTCGTATGCCGTCTT 4785 0.20206883009115267 No Hit CGTTCTGTCTCTTATACACATCTGACGCTGATTACCTCGTATGCCGTCTTC 3213 0.13568383512703733 No Hit CGTTTTCTGTCTCTTATACACATCTGACGCTGATTACCTCGTATGCCGTCT 3165 0.13365681238004143 No Hit CGCTGTCTCTTATACACATCTGACGCTGATTACCTCGTATGCCGTCTTCTG 2427 0.10249133764497964 TruSeq Adapter, Index 10 (95% over 22bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 8.445928112482871E-5 0.0 0.0 0.05337826567089174 0.0 2 8.445928112482871E-5 0.0 0.0 0.1567564257676821 0.0 3 8.445928112482871E-5 0.0 0.0 0.32647735118802534 0.0 4 8.445928112482871E-5 0.0 0.0 0.4907928826163796 0.0 5 8.445928112482871E-5 0.0 0.0 0.8847531994231431 0.0 6 8.445928112482871E-5 0.0 0.0 1.7926482418744893 0.0 7 8.445928112482871E-5 0.0 0.0 2.3645642640112667 0.0 8 8.445928112482871E-5 0.0 0.0 3.324021697589321 0.0 9 8.445928112482871E-5 0.0 0.0 3.9468244366038077 0.0 10 8.445928112482871E-5 0.0 0.0 4.605100073690723 0.0 11 8.445928112482871E-5 0.0 0.0 5.047666706784825 0.0 12 8.445928112482871E-5 0.0 0.0 5.385377142362453 0.0 13 8.445928112482871E-5 0.0 0.0 5.634447562399573 0.0 14 8.445928112482871E-5 0.0 0.0 5.817766432081013 0.0 15 8.445928112482871E-5 0.0 0.0 5.942723938505197 0.0 16 8.445928112482871E-5 0.0 0.0 6.083855397264786 0.0 17 8.445928112482871E-5 0.0 0.0 6.230687857500301 0.0 18 8.445928112482871E-5 0.0 0.0 6.433812428605514 0.0 19 8.445928112482871E-5 0.0 0.0 6.565611136800809 0.0 20 8.445928112482871E-5 0.0 0.0 6.706531447357586 0.0 21 8.445928112482871E-5 0.0 0.0 6.85720680488428 0.0 22 8.445928112482871E-5 0.0 0.0 7.032079746453238 0.0 23 8.445928112482871E-5 0.0 0.0 7.214596252963993 0.0 24 8.445928112482871E-5 0.0 0.0 7.375153346382293 0.0 25 8.445928112482871E-5 0.0 0.0 7.519916554230249 0.0 26 8.445928112482871E-5 0.0 0.0 7.663666250704707 0.0 27 8.445928112482871E-5 0.0 0.0 7.82620813722944 0.0 28 8.445928112482871E-5 0.0 0.0 7.988032119864612 0.0 29 8.445928112482871E-5 0.0 0.0 8.164383098853254 0.0 30 8.445928112482871E-5 0.0 0.0 8.379036361832005 0.0 31 8.445928112482871E-5 0.0 0.0 8.553402547714215 0.0 32 8.445928112482871E-5 0.0 0.0 8.737481550925779 0.0 33 8.445928112482871E-5 0.0 0.0 8.916112930504791 0.0 34 8.445928112482871E-5 0.0 0.0 9.101627741495479 0.0 35 8.445928112482871E-5 0.0 0.0 9.296221925207083 0.0 36 8.445928112482871E-5 0.0 0.0 9.501457978340417 0.0 37 8.445928112482871E-5 0.0 0.0 9.700528503951638 0.0 38 8.445928112482871E-5 0.0 0.0 9.946389471306015 0.0 39 8.445928112482871E-5 0.0 0.0 10.289716449078444 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTTT 25830 0.0 43.81533 1 TATCGCG 95 0.0 40.263157 1 TAGGGAC 2680 0.0 39.794773 5 CGGTCTA 230 0.0 39.130432 31 GTTTTTT 29705 0.0 38.46322 2 TAAGGGA 3305 0.0 38.39637 4 TAGGGAT 3510 0.0 38.141026 5 GGGCGAT 3980 0.0 38.103016 7 CACGACC 325 0.0 38.07692 27 ATAGGGA 3370 0.0 37.922848 4 GGCGATA 870 0.0 37.75862 8 AGGGCGA 2060 0.0 37.682037 6 AGGGATT 4120 0.0 37.627426 6 TTAGGGA 3040 0.0 37.598682 4 TAGCGGG 1235 0.0 37.348175 3 AAGGGAT 3385 0.0 37.090103 5 TAGGGCG 910 0.0 37.08791 5 CGTAAGG 390 0.0 36.923077 2 TACGGCG 470 0.0 36.861702 15 ACGGGAT 1115 0.0 36.72646 5 >>END_MODULE