##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547434_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 3377160 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.270813938338723 31.0 31.0 33.0 30.0 34.0 2 31.666348944083193 31.0 31.0 34.0 30.0 34.0 3 31.819278032429615 31.0 31.0 34.0 30.0 34.0 4 35.56906098615405 37.0 35.0 37.0 33.0 37.0 5 35.43280093332859 37.0 35.0 37.0 33.0 37.0 6 35.47249819374859 37.0 35.0 37.0 33.0 37.0 7 35.88262771085764 37.0 35.0 37.0 35.0 37.0 8 35.914952208364426 37.0 35.0 37.0 35.0 37.0 9 37.65758625590733 39.0 37.0 39.0 35.0 39.0 10 36.95203454974002 39.0 37.0 39.0 32.0 39.0 11 36.67451556929491 39.0 35.0 39.0 32.0 39.0 12 36.11403635006929 38.0 35.0 39.0 32.0 39.0 13 35.87341109097585 38.0 35.0 39.0 31.0 39.0 14 36.90145151547454 39.0 35.0 41.0 31.0 41.0 15 37.110554134242975 39.0 35.0 41.0 32.0 41.0 16 37.20290836087126 39.0 35.0 41.0 32.0 41.0 17 37.14524008338367 39.0 35.0 41.0 32.0 41.0 18 37.049497506780845 39.0 35.0 41.0 32.0 41.0 19 37.01226207819588 39.0 35.0 41.0 31.0 41.0 20 36.87145293678712 38.0 35.0 41.0 31.0 41.0 21 36.78852941524831 38.0 35.0 41.0 31.0 41.0 22 36.70443893685819 38.0 35.0 41.0 31.0 41.0 23 36.66155231022516 38.0 35.0 40.0 31.0 41.0 24 36.56359633538239 38.0 35.0 40.0 31.0 41.0 25 36.455987871465965 38.0 35.0 40.0 31.0 41.0 26 36.303797273448694 38.0 35.0 40.0 30.0 41.0 27 36.21554975186251 38.0 35.0 40.0 30.0 41.0 28 36.1385936704213 38.0 35.0 40.0 30.0 41.0 29 36.19601055324592 38.0 35.0 40.0 30.0 41.0 30 36.143199315401105 38.0 35.0 40.0 30.0 41.0 31 36.01639780170321 38.0 35.0 40.0 30.0 41.0 32 35.96521041348352 38.0 35.0 40.0 30.0 41.0 33 35.879050444752394 38.0 35.0 40.0 29.0 41.0 34 35.76363749422592 38.0 35.0 40.0 29.0 41.0 35 35.6671229672269 38.0 34.0 40.0 29.0 41.0 36 35.60650783498561 38.0 34.0 40.0 28.0 41.0 37 35.55881894846557 38.0 34.0 40.0 28.0 41.0 38 35.44798499330798 38.0 34.0 40.0 27.0 41.0 39 35.40187672482204 38.0 34.0 40.0 27.0 41.0 40 35.28540756138294 38.0 34.0 40.0 27.0 41.0 41 35.20939250731384 38.0 34.0 40.0 27.0 41.0 42 35.16937693209679 37.0 34.0 40.0 27.0 41.0 43 35.140048739177296 37.0 34.0 40.0 27.0 41.0 44 35.01829406957325 37.0 34.0 40.0 26.0 41.0 45 34.890578178114154 37.0 34.0 40.0 26.0 41.0 46 34.87180708050551 37.0 34.0 40.0 26.0 41.0 47 34.80785097537576 37.0 34.0 40.0 26.0 41.0 48 34.73564563124045 37.0 34.0 40.0 26.0 41.0 49 34.67730104584918 36.0 34.0 40.0 26.0 41.0 50 34.566788070449725 36.0 33.0 40.0 26.0 41.0 51 34.003848203816226 36.0 33.0 40.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 2.0 10 1.0 11 5.0 12 2.0 13 11.0 14 23.0 15 94.0 16 226.0 17 580.0 18 1443.0 19 2729.0 20 4576.0 21 7682.0 22 11938.0 23 17454.0 24 25022.0 25 35426.0 26 46175.0 27 55347.0 28 63507.0 29 74702.0 30 89767.0 31 109500.0 32 136019.0 33 173784.0 34 276043.0 35 383139.0 36 264596.0 37 327285.0 38 471129.0 39 798525.0 40 428.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 34.45377180826493 23.871270535005745 28.870234161247915 12.80472349548141 2 31.053873668999987 25.374219758613748 29.766194080233095 13.80571249215317 3 29.318599059564843 26.15688922052849 30.72649800424025 13.798013715666418 4 26.475055964182925 28.383434601854812 29.859674993189543 15.281834440772721 5 23.383789930000358 32.10351301093226 29.521136102524014 14.991560956543367 6 21.731691717300926 40.54984069454808 26.990400217934596 10.728067370216394 7 88.34354901751767 3.950538322140497 5.968654135427401 1.737258524914425 8 88.67119117838658 3.1269765128095797 5.931848061684966 2.269984247118881 9 83.63157209015858 5.340285920714447 7.7978242073221296 3.2303177818048296 10 42.64381906690829 28.335613355600564 15.19670373923652 13.823863838254628 11 35.92835400158713 25.07225005626029 23.204911819398546 15.79448412275403 12 33.343963567020815 22.586522403439577 26.332243660353672 17.737270369185943 13 23.658103258359095 31.20488813085551 27.41270771891175 17.724300891873646 14 19.094505442442763 33.217525968565305 29.341280839521964 18.34668774946997 15 18.120935934335357 26.328216608037526 38.760615428348075 16.79023202927904 16 21.05591680583686 23.780010422958934 36.84735102867498 18.316721742529225 17 21.948886046263723 23.592397162112544 28.026270594227103 26.43244619739663 18 23.028669059209513 25.030528609837855 31.84068862594606 20.10011370500657 19 26.83476649018702 26.363986308022124 26.813979793672786 19.987267408118065 20 28.27775408923474 26.666429781236307 26.11839533809473 18.937420791434224 21 24.408052920205144 27.438054459960444 29.040436342962728 19.11345627687169 22 23.476412133271744 24.800808963744686 28.723809354605645 22.998969548377925 23 21.872668159044878 28.147170995747906 28.06088547773869 21.919275367468526 24 21.723311895201885 26.0210946475737 33.257974155799545 18.997619301424866 25 21.579996209833112 26.538037877980315 30.7730756019851 21.108890310201474 26 19.649379952386028 31.486219190088715 27.2630849589596 21.60131589856566 27 19.878004003363774 30.862262966516248 29.235837212332257 20.023895817787725 28 18.33336294401213 28.79899086806666 33.23943787087375 19.62820831704746 29 20.13043504009286 26.961825912897226 32.14795863980386 20.759780407206055 30 21.65520733397292 28.540993023724077 30.145951035781543 19.657848606521455 31 25.571456490068577 27.49766075637518 26.740574920939487 20.190307832616757 32 26.95314998401023 27.421502090513922 27.190686849305333 18.43466107617051 33 25.666447547643585 28.14936218597875 26.475352070970875 19.70883819540679 34 21.03270203366142 27.85147875729903 29.671232633336885 21.44458657570266 35 21.670989825770768 28.313642231934526 29.01141787774343 21.00395006455128 36 26.026128462968884 28.047264565492902 26.663350270641605 19.263256700896612 37 22.31380805173578 30.573884565729788 27.792109346314653 19.320198036219782 38 21.81489772471544 30.7934477489962 26.287353871300144 21.104300654988215 39 21.785020549811087 28.81595778701631 27.695785808193868 21.70323585497874 40 23.94026341659856 26.72162408651056 27.250263535041274 22.087848961849602 41 19.858934726219662 25.773075601985102 29.5261403072404 24.841849364554832 42 22.628184628504425 26.551836454298876 27.016131897807625 23.80384701938907 43 21.888361818806334 26.81892477703159 27.731673950893647 23.561039453268425 44 21.60839285079771 28.744773715192647 28.285808193867034 21.361025240142606 45 20.34999822335927 31.191652157434056 26.305357164007624 22.152992455199044 46 21.966622842862048 29.74001824017814 27.365093747409063 20.92826516955075 47 21.965349583673856 28.070420116310746 28.03014959314927 21.934080706866123 48 21.790054365206267 26.73382368617418 29.74368996434874 21.732431984270807 49 21.41811462885975 26.68286370796764 29.939416551185023 21.95960511198759 50 20.59914247474209 29.568335524523565 28.90437527389878 20.928146726835568 51 20.01302869866989 30.007076952232055 27.129481576235655 22.850412772862406 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 3600.0 1 4377.5 2 5155.0 3 15622.0 4 26089.0 5 18151.0 6 10213.0 7 10789.5 8 11366.0 9 12904.0 10 14442.0 11 14911.0 12 15380.0 13 15121.5 14 14863.0 15 14971.0 16 15079.0 17 13924.0 18 12769.0 19 13250.5 20 13732.0 21 14475.0 22 15218.0 23 16885.0 24 18552.0 25 18027.5 26 26677.0 27 35851.0 28 40904.0 29 45957.0 30 53693.5 31 61430.0 32 69660.0 33 77890.0 34 85897.0 35 93904.0 36 105246.0 37 116588.0 38 132509.5 39 148431.0 40 175655.0 41 202879.0 42 233328.5 43 263778.0 44 281126.5 45 298475.0 46 303611.0 47 308747.0 48 293561.5 49 278376.0 50 261264.5 51 244153.0 52 224351.5 53 204550.0 54 191961.5 55 179373.0 56 167431.5 57 155490.0 58 142212.0 59 128934.0 60 115668.5 61 102403.0 62 90966.5 63 79530.0 64 67204.0 65 54878.0 66 45601.5 67 36325.0 68 30605.0 69 24885.0 70 20321.0 71 15757.0 72 12879.5 73 10002.0 74 8498.5 75 5652.0 76 4309.0 77 3004.5 78 1700.0 79 1334.5 80 969.0 81 707.0 82 445.0 83 275.0 84 105.0 85 74.5 86 44.0 87 34.0 88 24.0 89 20.0 90 16.0 91 8.5 92 1.0 93 2.0 94 3.0 95 2.5 96 2.0 97 1.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 3377160.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 16.39787944679978 #Duplication Level Percentage of deduplicated Percentage of total 1 77.60188574928823 12.725063673611583 2 8.902622270131317 2.919682534920167 3 3.2998898088297257 1.6233358581873902 4 1.6708252914946506 1.0959196682637353 5 0.9577275882357408 0.7852350767381987 6 0.6630110151994304 0.6523184819484359 7 0.5078405562477495 0.5829255753682437 8 0.36248627848751447 0.47552050366058846 9 0.2950372624734686 0.4354186916118387 >10 2.72041579924906 10.29988772747096 >50 1.1884072303576783 14.414305032677019 >100 1.8183196415634921 51.85490496719793 >500 0.008602871377402158 0.9215997808399444 >1k 0.0027455972481070716 0.7168998783703655 >5k 0.0 0.0 >10k+ 1.8303981654047143E-4 0.49698254913362 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 16558 0.4902936194909332 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 4203 0.12445368297622854 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 2.96106787952007E-5 0.0 0.0 0.05128569567328761 0.0 2 2.96106787952007E-5 0.0 0.0 0.17559132525554016 0.0 3 2.96106787952007E-5 0.0 0.0 0.2789029835719954 0.0 4 2.96106787952007E-5 0.0 0.0 0.47850856933044333 0.0 5 2.96106787952007E-5 0.0 0.0 0.8097040116547631 0.0 6 2.96106787952007E-5 0.0 0.0 1.2728742493692926 0.0 7 2.96106787952007E-5 0.0 0.0 1.4975600800672755 0.0 8 2.96106787952007E-5 0.0 0.0 2.0702602186452523 0.0 9 2.96106787952007E-5 0.0 0.0 2.283990098189011 0.0 10 2.96106787952007E-5 0.0 0.0 2.664043160525412 0.0 11 2.96106787952007E-5 0.0 0.0 3.102221985336792 0.0 12 2.96106787952007E-5 0.0 0.0 3.432173779151713 0.0 13 5.92213575904014E-5 0.0 0.0 3.589880254414952 0.0 14 5.92213575904014E-5 0.0 0.0 3.657718319534757 0.0 15 5.92213575904014E-5 0.0 0.0 3.757861635220126 0.0 16 5.92213575904014E-5 0.0 0.0 3.972983216667259 0.0 17 5.92213575904014E-5 0.0 0.0 4.2055750986035605 0.0 18 5.92213575904014E-5 0.0 0.0 4.49987563514906 0.0 19 5.92213575904014E-5 0.0 0.0 4.649794501889161 0.0 20 5.92213575904014E-5 0.0 0.0 4.820529675822288 0.0 21 5.92213575904014E-5 0.0 0.0 5.046962536569188 0.0 22 5.92213575904014E-5 0.0 0.0 5.277925831171753 0.0 23 5.92213575904014E-5 0.0 0.0 5.529202051427827 0.0 24 5.92213575904014E-5 0.0 0.0 5.720042876262895 0.0 25 5.92213575904014E-5 0.0 0.0 5.882042899951439 0.0 26 5.92213575904014E-5 0.0 0.0 6.043213824633716 0.0 27 5.92213575904014E-5 0.0 0.0 6.211106373402504 0.0 28 5.92213575904014E-5 0.0 0.0 6.376393182437314 0.0 29 5.92213575904014E-5 0.0 0.0 6.572415876061543 0.0 30 5.92213575904014E-5 0.0 0.0 6.8208790818320715 0.0 31 8.88320363856021E-5 0.0 0.0 7.032032832320648 0.0 32 8.88320363856021E-5 0.0 0.0 7.235547027680062 0.0 33 8.88320363856021E-5 0.0 0.0 7.431036729085978 0.0 34 8.88320363856021E-5 0.0 0.0 7.6479645619396175 0.0 35 8.88320363856021E-5 0.0 0.0 7.896131660922195 0.0 36 8.88320363856021E-5 0.0 0.0 8.11154934915728 0.0 37 8.88320363856021E-5 0.0 0.0 8.333303722654538 0.0 38 8.88320363856021E-5 0.0 0.0 8.582299920643381 0.0 39 8.88320363856021E-5 0.0 0.0 8.938960546731574 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGCGAAC 25 3.8924187E-5 45.0 31 CATTACG 30 2.1667583E-6 44.999996 42 TAGTACG 120 0.0 43.124996 1 CGCATCG 120 0.0 41.249996 21 GTTAGCG 225 0.0 41.0 1 CGTTTTT 9050 0.0 40.823204 1 CGACGAA 45 1.9301297E-8 40.0 37 CTCACGA 470 0.0 39.255318 24 CGGCATA 75 0.0 39.0 34 TTTACGA 110 0.0 38.863636 15 ACGGGAT 1170 0.0 38.846157 5 TTTCGCG 105 0.0 38.57143 1 TTACGAG 175 0.0 38.571426 1 TACGTAG 240 0.0 38.437496 1 CGGGATA 705 0.0 38.297874 6 ATAGGGC 1665 0.0 37.972973 4 AGGGCGA 2870 0.0 37.944252 6 ATACGAG 220 0.0 37.840908 1 GGGCGAT 5005 0.0 37.67233 7 ACGGGTA 360 0.0 37.5 5 >>END_MODULE