SRR1547432_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547432_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2366533
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	13610	0.5751029036992089	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	3493	0.14759988557100195	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	3236	0.13674011729394858	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	2656	0.11223169083211602	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGCGTT	20	7.034803E-4	45.0	13
CGCATTA	25	3.892063E-5	45.0	16
CGCATCG	100	0.0	45.0	21
TCGATAG	90	0.0	45.0	1
CCGTCGA	20	7.034803E-4	45.0	43
ATATCGA	25	3.892063E-5	45.0	16
ACGATAC	35	1.2126657E-7	45.0	20
TACGATA	35	1.2126657E-7	45.0	23
CGCTAAT	20	7.034803E-4	45.0	22
GCGATCG	25	3.892063E-5	45.0	9
TTACGAC	20	7.034803E-4	45.0	18
ACCCGTA	20	7.034803E-4	45.0	33
ACGTAAC	20	7.034803E-4	45.0	44
CACGTAA	20	7.034803E-4	45.0	23
TTACCCG	20	7.034803E-4	45.0	24
TACCGTT	70	0.0	45.0	14
CGAAGTA	40	6.8212103E-9	45.0	21
CGTATCA	65	0.0	44.999996	38
ATTACGT	30	2.16648E-6	44.999996	33
GAACGTA	30	2.16648E-6	44.999996	36