SRR1547431_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547431_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1019675
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8053	0.7897614435972247	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	2136	0.20947851030965747	No Hit
AGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	1980	0.19417951798367125	No Hit
TGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	1413	0.13857356510652905	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1307	0.12817809596194868	No Hit
GAGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	1281	0.1256282639076176	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AAGTACG	25	3.8904946E-5	45.0	1
AATCCCG	25	3.8904946E-5	45.0	23
ATTAGCG	25	3.8904946E-5	45.0	1
AGTCACG	20	7.0329127E-4	45.0	1
TCTTCGA	25	3.8904946E-5	45.0	26
GACCGTT	25	3.8904946E-5	45.0	37
CGCATCA	20	7.0329127E-4	45.0	18
CGTTCGA	20	7.0329127E-4	45.0	14
ATCGTAG	20	7.0329127E-4	45.0	1
CGCCTAT	25	3.8904946E-5	45.0	32
CCCGTGA	20	7.0329127E-4	45.0	11
CCGTAGA	25	3.8904946E-5	45.0	12
TACGATT	20	7.0329127E-4	45.0	44
CGGATGT	25	3.8904946E-5	45.0	6
TGTTACG	25	3.8904946E-5	45.0	1
TCCGTTA	20	7.0329127E-4	45.0	45
CATGTCG	20	7.0329127E-4	45.0	13
TAGATCA	25	3.8904946E-5	45.0	33
CGGTCCC	20	7.0329127E-4	45.0	28
ATACGGA	20	7.0329127E-4	45.0	4