SRR1547429_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547429_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	944183
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	13271	1.4055537962450075	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	2257	0.23904264321641036	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2170	0.22982832777120538	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TATCACG	35	1.2116107E-7	45.000004	1
TCGATAG	55	1.8189894E-12	45.000004	1
GTTACAT	35	1.2116107E-7	45.000004	32
AATAGTC	35	1.2116107E-7	45.000004	34
CGAACGA	25	3.890275E-5	45.0	18
GATCGTC	20	7.032646E-4	45.0	9
TCGATTG	25	3.890275E-5	45.0	1
CGACACC	20	7.032646E-4	45.0	17
TCGATAA	20	7.032646E-4	45.0	14
CGTTCCG	25	3.890275E-5	45.0	14
CCGTCAC	20	7.032646E-4	45.0	32
ATCCGTC	40	6.8121153E-9	45.0	28
TACGCGC	20	7.032646E-4	45.0	34
CTACGAT	50	2.1827873E-11	45.0	42
TACGAAG	50	2.1827873E-11	45.0	1
CCGAGTT	20	7.032646E-4	45.0	41
GTCGTCA	20	7.032646E-4	45.0	9
GGTATCG	25	3.890275E-5	45.0	1
CGTAATT	20	7.032646E-4	45.0	39
CCGGTCA	20	7.032646E-4	45.0	31