SRR1547427_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547427_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1788572
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	9621	0.537915163605379	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	2937	0.16420921271271158	No Hit
GAGCTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGTCTTCT	1918	0.10723638746441294	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGATAG	35	1.2124292E-7	45.000004	1
TCGAGTA	35	1.2124292E-7	45.000004	1
TCCATCG	25	3.8916798E-5	45.0	18
GGTCGAA	20	7.03434E-4	45.0	17
CGCGGAT	20	7.03434E-4	45.0	23
ACGTTAG	25	3.8916798E-5	45.0	1
GCGAACG	45	3.8562575E-10	45.0	1
CGTTGCC	25	3.8916798E-5	45.0	16
TAACGCG	40	6.8193913E-9	45.0	1
CGCGAAC	20	7.03434E-4	45.0	40
CGTTAGT	20	7.03434E-4	45.0	31
TACGCGG	110	0.0	45.0	2
CGCTATA	25	3.8916798E-5	45.0	31
CTACGAT	20	7.03434E-4	45.0	39
CGCTAAC	45	3.8562575E-10	45.0	24
GTCGTAA	25	3.8916798E-5	45.0	10
GTCCGAT	25	3.8916798E-5	45.0	8
CGTACGT	20	7.03434E-4	45.0	12
TCCGTCT	20	7.03434E-4	45.0	24
TTACGGC	25	3.8916798E-5	45.0	14