SRR1547425_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547425_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1391745
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	11842	0.8508742621672792	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	2418	0.17373872368860677	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCACGAC	50	2.1827873E-11	45.0	25
CTATCGA	25	3.8912323E-5	45.0	43
TAGCGCG	20	7.0338E-4	45.0	1
TAACGCG	40	6.8175723E-9	45.0	1
TCGATCA	20	7.0338E-4	45.0	17
CATTACG	25	3.8912323E-5	45.0	35
TCGGACG	25	3.8912323E-5	45.0	11
CCTCACG	40	6.8175723E-9	45.0	45
AACGCCA	35	1.2121745E-7	45.0	30
GTCGTTG	20	7.0338E-4	45.0	1
CGTAAAC	50	2.1827873E-11	45.0	35
TATCGTC	20	7.0338E-4	45.0	22
CCGTTCC	35	1.2121745E-7	45.0	16
TCGAACT	20	7.0338E-4	45.0	16
CGGACTA	25	3.8912323E-5	45.0	11
CTTAACG	30	2.1658343E-6	44.999996	1
ACTAACG	30	2.1658343E-6	44.999996	25
TACTCGC	135	0.0	43.333332	45
CGTTAGG	125	0.0	43.2	2
GCGCGAC	75	0.0	42.0	9