SRR1547420_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547420_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1411027
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	17146	1.21514329633664	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	2455	0.1739867486589555	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1595	0.11303823385378167	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	1415	0.1002815679643267	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACACCGT	30	2.1658543E-6	45.000004	38
ACTCTCG	30	2.1658543E-6	45.000004	41
GTCAACC	30	2.1658543E-6	45.000004	33
CGTACTC	30	2.1658543E-6	45.000004	30
TATAACG	60	0.0	45.000004	1
TGTCGCG	30	2.1658543E-6	45.000004	24
GTCGGAT	30	2.1658543E-6	45.000004	21
TATCCGA	30	2.1658543E-6	45.000004	13
TGATCGC	20	7.0338335E-4	45.0	19
CGAACGC	20	7.0338335E-4	45.0	24
GATCGAC	20	7.0338335E-4	45.0	8
CGTTGCG	20	7.0338335E-4	45.0	31
GCACGAG	40	6.8175723E-9	45.0	1
CGCGATG	40	6.8175723E-9	45.0	22
ACCTCGC	20	7.0338335E-4	45.0	33
CGTTATG	20	7.0338335E-4	45.0	29
TTATACG	40	6.8175723E-9	45.0	1
ATCCGCC	35	1.2121927E-7	45.0	19
CGTAGGT	40	6.8175723E-9	45.0	3
GTGTCGA	20	7.0338335E-4	45.0	23