##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547419_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 3169662 Sequences flagged as poor quality 0 Sequence length 51 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.270439561063608 31.0 31.0 33.0 30.0 34.0 2 31.676480331341324 31.0 31.0 34.0 30.0 34.0 3 31.674865017153248 31.0 31.0 34.0 30.0 34.0 4 35.5400276117769 37.0 35.0 37.0 33.0 37.0 5 35.46674030227829 37.0 35.0 37.0 33.0 37.0 6 35.520520169027485 37.0 35.0 37.0 33.0 37.0 7 35.95415820361919 37.0 35.0 37.0 35.0 37.0 8 35.95319784885581 37.0 35.0 37.0 35.0 37.0 9 37.66066791979713 39.0 37.0 39.0 35.0 39.0 10 36.68365396688984 39.0 37.0 39.0 32.0 39.0 11 36.61533501048377 39.0 35.0 39.0 32.0 39.0 12 36.42780428954254 39.0 35.0 39.0 32.0 39.0 13 36.323242667514705 39.0 35.0 39.0 32.0 39.0 14 37.438987185384434 39.0 36.0 41.0 32.0 41.0 15 37.55409157190893 40.0 36.0 41.0 32.0 41.0 16 37.60425559570705 40.0 36.0 41.0 32.0 41.0 17 37.524434466514094 39.0 36.0 41.0 32.0 41.0 18 37.32884925900616 39.0 36.0 41.0 32.0 41.0 19 37.18527464442581 38.0 36.0 41.0 32.0 41.0 20 36.949235912220296 38.0 35.0 41.0 32.0 41.0 21 36.82163776453136 38.0 35.0 40.0 31.0 41.0 22 36.74693926355555 38.0 35.0 40.0 31.0 41.0 23 36.6575066994525 38.0 35.0 40.0 31.0 41.0 24 36.50665402178529 38.0 35.0 40.0 31.0 41.0 25 36.415259103336574 38.0 35.0 40.0 31.0 41.0 26 36.29008171849238 38.0 35.0 40.0 30.0 41.0 27 36.20023933151232 38.0 35.0 40.0 30.0 41.0 28 36.242901293576416 38.0 35.0 40.0 30.0 41.0 29 36.223877814101314 38.0 35.0 40.0 30.0 41.0 30 36.12707443254202 38.0 35.0 40.0 30.0 41.0 31 35.974817188709714 38.0 35.0 40.0 30.0 41.0 32 35.741872477254674 38.0 35.0 40.0 29.0 41.0 33 35.36470292416037 38.0 34.0 40.0 26.0 41.0 34 34.953142006939544 38.0 34.0 40.0 24.0 41.0 35 34.648464410400855 38.0 34.0 40.0 23.0 41.0 36 34.43499937848263 38.0 33.0 40.0 21.0 41.0 37 34.33211301394281 38.0 33.0 40.0 21.0 41.0 38 34.23655298262086 38.0 33.0 40.0 21.0 41.0 39 34.19368689784589 38.0 33.0 40.0 20.0 41.0 40 34.044374447496295 38.0 33.0 40.0 19.0 41.0 41 33.959763217655386 38.0 33.0 40.0 18.0 41.0 42 33.88308627229023 37.0 33.0 40.0 18.0 41.0 43 33.82870444861313 37.0 33.0 40.0 18.0 41.0 44 33.71206614459207 37.0 33.0 40.0 18.0 41.0 45 33.60961168730294 37.0 33.0 40.0 18.0 41.0 46 33.52632488889983 37.0 33.0 40.0 18.0 41.0 47 33.38486248691501 37.0 32.0 40.0 18.0 41.0 48 33.319729359155644 36.0 32.0 40.0 18.0 41.0 49 33.210295293315184 36.0 32.0 40.0 17.0 41.0 50 33.139274787027766 36.0 32.0 40.0 17.0 41.0 51 32.73129437776015 36.0 31.0 40.0 15.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 2.0 11 4.0 12 4.0 13 13.0 14 28.0 15 118.0 16 317.0 17 747.0 18 1711.0 19 3353.0 20 6013.0 21 9376.0 22 14645.0 23 21857.0 24 32984.0 25 51235.0 26 74060.0 27 82776.0 28 81012.0 29 81050.0 30 86759.0 31 100907.0 32 121067.0 33 151193.0 34 220567.0 35 299970.0 36 264669.0 37 310693.0 38 447939.0 39 704425.0 40 168.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 28.842759890486747 24.241480637367644 27.84959405766293 19.06616541448268 2 34.36527301649198 25.16949756787948 28.563045523465906 11.902183892162634 3 26.140011143143973 24.416862113373604 37.538387373795686 11.904739369686736 4 23.204903235739334 26.53405946753944 36.83427444314252 13.426762853578712 5 21.131432941430347 30.565940469362346 35.61401815083122 12.688608438376079 6 20.14571269744219 38.62414983048666 31.816263058963383 9.41387441310777 7 84.2634956030012 2.4752481494872325 12.188681316809175 1.0725749307023904 8 85.0460080601654 1.725073525189752 11.999512881815159 1.2294055328296833 9 80.26199638952039 3.382758161595779 14.503943953645532 1.8513014952382933 10 31.538662481993345 21.383415644948894 35.837575110532285 11.240346762525467 11 29.40136834779229 25.027652790739204 28.333368037349093 17.237610824119418 12 26.588734066913126 23.550618330913515 31.564816690233847 18.295830911939508 13 21.996383210575765 27.56287578927974 32.611079667169555 17.829661332974936 14 18.288669265050974 30.098824417240706 33.48880732393549 18.123698993772837 15 18.319366544445433 26.967228682427336 38.41245533435426 16.300949438772967 16 20.537521035365916 25.306420684602966 37.49705804593676 16.65900023409436 17 20.56282341776505 25.893707278567874 32.73046148138193 20.81300782228515 18 21.348269941716183 26.151431919239336 34.86643055316308 17.633867585881397 19 23.05012332545237 27.561392981333654 31.36851815745654 18.01996553575744 20 24.250724525201743 27.14339888606419 31.96725707662205 16.638619512112015 21 21.888359074248296 27.830790790942377 33.301500286150386 16.97934984865894 22 21.880881936307404 24.676195758412096 33.50565454613142 19.937267759149083 23 19.73809825779531 27.92029560249642 33.18341198525269 19.158194154455586 24 19.158446547297473 26.787777371845955 36.73511560538631 17.318660475470253 25 19.05701617396429 28.10873840807001 34.653852682084086 18.180392735881618 26 19.233407221337796 30.966298614804987 31.732279340825613 18.068014823031604 27 18.088206250382534 30.419615719278585 33.58834475095452 17.90383327938436 28 17.24991497516139 29.54286608477497 35.28063875580425 17.926580184259393 29 18.191434922714155 28.08778980219342 35.103585177220786 18.61719009787163 30 18.499953622815305 29.42985718982024 34.045743678663534 18.02444550870093 31 21.176138023549516 28.613240149896107 32.086796636360596 18.12382519019378 32 21.921611831166857 28.573015040720428 31.615232160400698 17.890140967712014 33 21.141623302421518 28.864371027573288 31.102527651213286 18.89147801879191 34 18.727643515302262 29.28766537252237 32.08704902920248 19.897642082972887 35 19.465924126925838 29.432696609291465 31.787584922304017 19.313794341478683 36 21.94060439251882 29.64467504737098 29.641330842215986 18.77338971789421 37 19.54233605980701 31.245918334510115 30.151953110457836 19.059792495225043 38 20.12037876593782 31.347064765896178 29.274793337586154 19.257763130579853 39 19.969605592015803 30.488834456165986 29.318299553706357 20.22326039811185 40 21.297002645707966 29.38354310333405 29.681713696917843 19.637740554040146 41 18.595263469732735 29.0632250378747 30.012695359946896 22.328816132445667 42 19.976167805904858 29.843781450514285 29.015869830915726 21.164180912665138 43 19.73137829838008 29.63211850348712 29.084362938382704 21.552140259750093 44 19.87568390572875 30.70690187155602 28.970218275639485 20.447195947075745 45 19.285968030660683 32.00584163232546 27.92449163349278 20.78369870352107 46 20.33664788232941 31.529544790580193 28.602134864853095 19.5316724622373 47 20.01017774134908 30.14293006636039 29.240183969142453 20.606708223148082 48 20.319043481607817 29.740047992498887 30.219121155504908 19.721787370388387 49 20.111828958418908 28.44811213309179 30.755077355251125 20.684981553238167 50 19.1440286062047 30.384943252624414 29.864666958180397 20.60636118299049 51 18.35353422541583 31.05529864067525 29.41957218151336 21.171594952395555 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1810.0 1 2515.5 2 3221.0 3 44185.5 4 85150.0 5 58048.5 6 30947.0 7 31394.5 8 31842.0 9 34331.0 10 36820.0 11 39021.5 12 41223.0 13 41155.0 14 41087.0 15 38760.0 16 36433.0 17 33475.0 18 30517.0 19 28756.0 20 26995.0 21 26579.0 22 26163.0 23 25738.0 24 25313.0 25 28244.5 26 34348.5 27 37521.0 28 45091.0 29 52661.0 30 60465.0 31 68269.0 32 77101.0 33 85933.0 34 94135.5 35 102338.0 36 110933.0 37 119528.0 38 131004.5 39 142481.0 40 162105.5 41 181730.0 42 198131.0 43 214532.0 44 227422.5 45 240313.0 46 246027.5 47 251742.0 48 247378.0 49 243014.0 50 232484.0 51 221954.0 52 202174.5 53 182395.0 54 165551.5 55 148708.0 56 137722.5 57 126737.0 58 112379.0 59 98021.0 60 87597.0 61 77173.0 62 64740.0 63 52307.0 64 41528.5 65 30750.0 66 23650.5 67 16551.0 68 13450.0 69 10349.0 70 8164.5 71 5980.0 72 5032.0 73 4084.0 74 3360.5 75 2146.0 76 1655.0 77 1242.0 78 829.0 79 640.5 80 452.0 81 317.0 82 182.0 83 122.0 84 62.0 85 46.5 86 31.0 87 27.5 88 24.0 89 19.0 90 14.0 91 9.5 92 5.0 93 3.0 94 1.0 95 0.5 96 0.0 97 1.0 98 2.0 99 1.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 3169662.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 25.40706493802184 #Duplication Level Percentage of deduplicated Percentage of total 1 79.56813738106162 20.215928334380752 2 7.530136354229983 3.8263732668816033 3 2.813710973369486 2.144644122516695 4 1.5271410184726046 1.5520068410340109 5 1.0222201694902167 1.298580711359681 6 0.7376429546051835 1.1244805469236914 7 0.5535024925243922 0.9844011639646926 8 0.42386446656907356 0.861532162163235 9 0.3437029998962377 0.7859235993980963 >10 3.723661169274158 21.912817720740893 >50 1.1361853870790992 20.713418584467057 >100 0.6164443806017742 21.89363080636602 >500 0.0026432865292605303 0.46319937180546183 >1k 8.810955097535099E-4 0.33665422445430104 >5k 0.0 0.0 >10k+ 1.258707871076443E-4 1.886408543543826 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 58987 1.8609870705456923 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.05401206816373481 0.0 2 0.0 0.0 0.0 0.16172071343884617 0.0 3 0.0 0.0 0.0 0.24267571747397673 0.0 4 0.0 0.0 0.0 0.38871652561061715 0.0 5 0.0 0.0 0.0 0.7225060590056606 0.0 6 0.0 0.0 0.0 1.1997178248027707 0.0 7 0.0 0.0 0.0 1.4742265894596964 0.0 8 0.0 0.0 0.0 1.8874567698385507 0.0 9 0.0 0.0 0.0 2.0612607905827183 0.0 10 0.0 0.0 0.0 2.3721772226817874 0.0 11 0.0 0.0 0.0 2.703947613341738 0.0 12 0.0 0.0 0.0 2.933498903037611 0.0 13 0.0 0.0 0.0 3.0500728468839897 0.0 14 0.0 0.0 0.0 3.1074291202027218 0.0 15 0.0 0.0 0.0 3.1807176916655466 0.0 16 0.0 0.0 0.0 3.352029333096084 0.0 17 0.0 0.0 0.0 3.5536912137634866 0.0 18 0.0 0.0 0.0 3.7763017003074775 0.0 19 0.0 0.0 0.0 3.904958951459178 0.0 20 0.0 0.0 0.0 4.037496742554884 0.0 21 0.0 0.0 0.0 4.227327708758852 0.0 22 0.0 0.0 0.0 4.445931458937893 0.0 23 0.0 0.0 0.0 4.68920660941135 0.0 24 0.0 0.0 0.0 4.871749732305842 0.0 25 0.0 0.0 0.0 5.050286118835384 0.0 26 0.0 0.0 0.0 5.21352118932555 0.0 27 0.0 0.0 0.0 5.374579371554443 0.0 28 0.0 0.0 0.0 5.542546807829983 0.0 29 0.0 0.0 0.0 5.730894966087867 0.0 30 0.0 0.0 0.0 5.944955645112949 0.0 31 0.0 0.0 0.0 6.139739820838941 0.0 32 0.0 0.0 0.0 6.3349341349329995 0.0 33 0.0 0.0 0.0 6.52754142239772 0.0 34 0.0 0.0 0.0 6.722956580228428 0.0 35 0.0 0.0 0.0 6.935502902202191 0.0 36 0.0 0.0 0.0 7.144925862757606 0.0 37 0.0 0.0 0.0 7.3564626133638225 0.0 38 0.0 0.0 0.0 7.584373349587432 0.0 39 0.0 0.0 0.0 7.857683248245396 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTATGCG 90 0.0 45.0 1 CGTATCG 20 7.035166E-4 45.0 41 ATAGCGC 25 3.8923645E-5 45.0 15 CGCCGAT 20 7.035166E-4 45.0 15 CGTTTTT 32130 0.0 44.145657 1 TACGGGT 930 0.0 41.12903 4 TAGGGTA 3770 0.0 39.688328 5 ACGGGTA 750 0.0 39.3 5 GTTAGCG 150 0.0 39.0 1 TATAGCG 225 0.0 39.0 1 AGGGTAC 2545 0.0 38.634575 6 GTTTTTT 37135 0.0 38.601727 2 TAGGGCG 930 0.0 38.46774 5 CGTTAGG 330 0.0 38.18182 2 CGTTCGA 65 9.094947E-12 38.076927 14 AGGGCGA 2310 0.0 37.987015 6 TTAGGGT 3500 0.0 37.92857 4 GGGCGAT 4410 0.0 37.806126 7 GCGATGC 310 0.0 37.741936 9 ATAGGGT 3495 0.0 37.53219 4 >>END_MODULE