Basic Statistics
Measure | Value |
---|---|
Filename | SRR1547418_1.fastq.gz |
File type | Conventional base calls |
Encoding | Illumina 1.5 |
Total Sequences | 1546513 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 38 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 53652 | 3.469223989711047 | No Hit |
CGTTTCTGTCTCTTATACACATCTGACGCTGTGAGACTCGTATGCCGTCTT | 2106 | 0.13617732279004444 | No Hit |
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT | 1856 | 0.12001192359844372 | No Hit |
CGTTTTCTGTCTCTTATACACATCTGACGCTGTGAGACTCGTATGCCGTCT | 1647 | 0.10649764987426552 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGACGGT | 130 | 0.0 | 45.000004 | 28 |
CGTTGCG | 20 | 7.034044E-4 | 45.0 | 1 |
CGCGATG | 20 | 7.034044E-4 | 45.0 | 1 |
AACGGCT | 20 | 7.034044E-4 | 45.0 | 44 |
TACGTAC | 20 | 7.034044E-4 | 45.0 | 24 |
CGTTTTT | 20640 | 0.0 | 44.498547 | 1 |
TATAGCG | 110 | 0.0 | 42.954544 | 1 |
CGTTAGG | 225 | 0.0 | 42.0 | 2 |
GGTACGA | 65 | 0.0 | 41.538464 | 8 |
TTGCGAG | 145 | 0.0 | 40.34483 | 1 |
CGGTCTA | 145 | 0.0 | 40.34483 | 31 |
CGGGTTC | 90 | 0.0 | 40.0 | 6 |
GTTTTTT | 23270 | 0.0 | 39.778683 | 2 |
CGTGCGG | 85 | 0.0 | 39.705883 | 2 |
TAATGCG | 85 | 0.0 | 39.705883 | 1 |
TACGGGA | 505 | 0.0 | 39.65346 | 4 |
CGGGTAT | 165 | 0.0 | 39.545452 | 6 |
TCGCGAG | 40 | 3.459263E-7 | 39.375 | 1 |
ACGGGTC | 115 | 0.0 | 39.130432 | 5 |
TAGGGCG | 530 | 0.0 | 39.056602 | 5 |