SRR1547413_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547413_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1868982
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	24303	1.3003335505638898	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	2442	0.1306593642956433	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	2210	0.11824618963692535	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TACGTAG	90	0.0	45.000004	1
TACCCGC	20	7.0344214E-4	45.0	29
GATCGAC	40	6.8193913E-9	45.0	9
CTATACG	35	1.2124838E-7	45.0	1
CACGCTA	20	7.0344214E-4	45.0	30
CAATTCG	20	7.0344214E-4	45.0	43
TAACGCG	40	6.8193913E-9	45.0	1
CGTTCGA	25	3.8917475E-5	45.0	14
CGTTCCA	20	7.0344214E-4	45.0	31
CCCGTTG	20	7.0344214E-4	45.0	11
AATGCGT	20	7.0344214E-4	45.0	25
AACGCGT	25	3.8917475E-5	45.0	42
ACTACGT	20	7.0344214E-4	45.0	13
GCGATCG	40	6.8193913E-9	45.0	9
ACGCTAG	50	2.1827873E-11	45.0	1
TTAACGC	20	7.0344214E-4	45.0	22
CGTACAC	20	7.0344214E-4	45.0	26
CGTCAAT	40	6.8193913E-9	45.0	12
GTACGAC	20	7.0344214E-4	45.0	34
TCGCACC	30	2.1662345E-6	44.999996	45