##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547413_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1868982 Sequences flagged as poor quality 0 Sequence length 51 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.348779174973327 31.0 31.0 33.0 30.0 34.0 2 31.759144282823485 31.0 31.0 34.0 30.0 34.0 3 31.851724093650983 31.0 31.0 34.0 30.0 34.0 4 35.64030365193458 37.0 35.0 37.0 33.0 37.0 5 35.52578516004969 37.0 35.0 37.0 33.0 37.0 6 35.57321900371432 37.0 35.0 37.0 33.0 37.0 7 35.94556929922278 37.0 35.0 37.0 35.0 37.0 8 35.92580720413573 37.0 35.0 37.0 35.0 37.0 9 37.64896933196788 39.0 37.0 39.0 35.0 39.0 10 36.97507145601188 39.0 37.0 39.0 32.0 39.0 11 36.70184785086213 39.0 35.0 39.0 32.0 39.0 12 36.213967282723964 38.0 35.0 39.0 32.0 39.0 13 35.95946830948613 38.0 35.0 39.0 31.0 39.0 14 37.08451445760312 39.0 35.0 41.0 31.0 41.0 15 37.29454804808179 39.0 35.0 41.0 32.0 41.0 16 37.40112157313447 39.0 35.0 41.0 32.0 41.0 17 37.337433961375766 39.0 35.0 41.0 32.0 41.0 18 37.23758334751218 39.0 35.0 41.0 32.0 41.0 19 37.14985965621927 38.0 35.0 41.0 32.0 41.0 20 36.96919231966921 38.0 35.0 41.0 32.0 41.0 21 36.85025644976784 38.0 35.0 41.0 31.0 41.0 22 36.74517946133243 38.0 35.0 41.0 31.0 41.0 23 36.64909667401826 38.0 35.0 40.0 31.0 41.0 24 36.51308412815105 38.0 35.0 40.0 31.0 41.0 25 36.42350648641881 38.0 35.0 40.0 31.0 41.0 26 36.277881220899935 38.0 35.0 40.0 31.0 41.0 27 36.16343389074908 38.0 35.0 40.0 30.0 41.0 28 36.22969670119883 38.0 35.0 40.0 30.0 41.0 29 36.259610311923815 38.0 35.0 40.0 30.0 41.0 30 36.19926195115844 38.0 35.0 40.0 30.0 41.0 31 36.079964387029946 38.0 35.0 40.0 30.0 41.0 32 35.92406133392403 38.0 35.0 40.0 30.0 41.0 33 35.70159798221706 38.0 35.0 40.0 29.0 41.0 34 35.497798801700604 38.0 34.0 40.0 28.0 41.0 35 35.3440552129448 38.0 34.0 40.0 27.0 41.0 36 35.146618854542204 38.0 34.0 40.0 26.0 41.0 37 35.03116990960854 38.0 34.0 40.0 25.0 41.0 38 34.9804690467859 37.0 34.0 40.0 25.0 41.0 39 34.95407018366148 37.0 34.0 40.0 25.0 41.0 40 34.779838971161844 37.0 34.0 40.0 24.0 41.0 41 34.72260674527631 37.0 34.0 40.0 24.0 41.0 42 34.6312719972691 37.0 34.0 40.0 24.0 41.0 43 34.563785526024326 37.0 33.0 40.0 24.0 41.0 44 34.42683129104507 37.0 33.0 40.0 23.0 41.0 45 34.35289424938282 36.0 33.0 40.0 23.0 41.0 46 34.25716994599199 36.0 33.0 40.0 23.0 41.0 47 34.1509490193057 36.0 33.0 40.0 23.0 41.0 48 34.10430062996861 36.0 33.0 40.0 23.0 41.0 49 33.98009451134361 36.0 33.0 40.0 23.0 41.0 50 33.89827349862117 36.0 33.0 40.0 23.0 41.0 51 33.4676058945458 35.0 32.0 39.0 22.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 1.0 11 2.0 12 7.0 13 18.0 14 28.0 15 74.0 16 181.0 17 378.0 18 832.0 19 1626.0 20 2877.0 21 4638.0 22 7111.0 23 10493.0 24 15080.0 25 21952.0 26 30285.0 27 35571.0 28 38887.0 29 42917.0 30 49079.0 31 60011.0 32 73498.0 33 95101.0 34 151994.0 35 218331.0 36 156416.0 37 177275.0 38 251464.0 39 422682.0 40 172.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.543481959697843 24.026181097517256 29.120077132899088 15.31025980988581 2 31.250755759017473 25.815925461026378 29.5636876117587 13.369631168197445 3 27.71326850659878 25.554071681803247 33.73815264138445 12.994507170213518 4 24.770757556787597 28.164851239872828 33.32386293714975 13.74052826618983 5 22.8009151506007 32.39587112128421 31.03395324299538 13.769260485119709 6 21.264303241015696 41.138116900002245 27.545262608200616 10.05231725078144 7 87.50983155536008 3.4660044880047 7.65598598595385 1.3681779706813657 8 87.73540890174438 3.156103162042224 7.384073254852106 1.724414681361297 9 83.19748397790883 5.981812558922451 8.744225466055854 2.0764779971128666 10 40.29899699408555 34.005356926926 15.420961785613773 10.274684293374682 11 34.880378730239244 24.019278944366505 26.07291027949975 15.027432045894503 12 34.07122165970566 22.779727145579788 26.621390682200257 16.5276605125143 13 21.508660864577614 33.27404972332532 26.89234032216469 18.324949089932378 14 16.276989291496655 34.86133092774569 29.120933213910032 19.74074656684762 15 15.824871507590762 29.53051447258454 37.80485847375737 16.839755546067327 16 17.86764131489763 25.732404057395954 38.39266509789822 18.007289529808208 17 17.86052514149414 26.77109784898945 28.973901300280048 26.394475709236364 18 19.625817691128113 29.40263737157447 31.69848612774227 19.27305880955515 19 23.46523401509485 30.271399082495176 26.279493328453675 19.983873573956306 20 26.007955132794216 27.07730732559222 29.302261873041047 17.612475668572518 21 21.798069751340567 30.851179947158396 29.203438021339963 18.14731228016107 22 23.09310630064923 27.55425145881555 26.725672050346123 22.6269701901891 23 19.85396328054524 32.184258596390976 27.44799040333187 20.51378771973192 24 19.039081168250952 27.972500537725885 35.57931537061352 17.40910292340964 25 17.76913849357565 31.254394103314 31.261563781780673 19.714903621329686 26 18.446726613739457 34.2652845238745 27.803585053253588 19.48440380913246 27 17.974223400760415 35.13827313478674 28.250726866283355 18.636776598169487 28 16.30256471169867 31.747068725113458 33.87822889680051 18.07213766638737 29 17.258646685735872 27.59887468151111 33.42386390024088 21.718614732512137 30 17.68609863551388 33.302139881496984 30.583815146427305 18.427946336561828 31 23.542655841522283 31.422400001712163 26.530218054534497 18.504726102231054 32 23.483639756830186 30.31645034569621 27.51096586269959 18.68894403477401 33 22.846661979623132 31.08430150745165 26.343057343516417 19.7259791694088 34 18.479311197218593 29.7855196037201 28.35918162935759 23.37598756970372 35 19.78462071865861 28.971012026868102 29.933728628740138 21.31063862573315 36 23.883911134510658 30.824587930755886 26.278369722126804 19.01313121260665 37 19.47536145345434 33.82012239818254 28.65843544774642 18.0460807006167 38 19.313936677827822 33.0216128352226 27.408182636322877 20.256267850626706 39 19.388576240969684 33.14911540079037 27.32728298078847 20.13502537745147 40 22.109148188693094 30.603130474236778 26.832842691903934 20.45487864516619 41 17.25126298701646 28.61959077187474 29.92907368824312 24.200072552865677 42 19.69692592009982 29.41799332470832 26.96248545999908 23.922595295192785 43 20.95996644162437 30.557116119898424 26.7072128035476 21.775704634929603 44 18.607348813418216 32.05263614095802 27.417171486937807 21.92284355868596 45 17.841316823811038 35.36764934065711 24.53463971295604 22.25639412257582 46 19.313348122132798 35.25106180797889 25.693987422029746 19.741602647858567 47 19.7765414541178 30.680284775348294 28.056556991988153 21.486616778545752 48 20.038555748530484 28.663946469254387 30.27626804324493 21.0212297389702 49 19.4559391155185 29.611574643308497 29.6351703761727 21.297315865000304 50 18.58022174638386 31.91844544249222 29.47674188408449 20.024590927039426 51 17.522854687739102 32.40598357822601 26.9114951347846 23.159666599250286 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1636.0 1 2526.0 2 3416.0 3 18019.5 4 32623.0 5 21566.0 6 10509.0 7 11315.5 8 12122.0 9 14090.5 10 16059.0 11 17882.0 12 19705.0 13 19867.5 14 20030.0 15 18932.5 16 17835.0 17 16474.5 18 15114.0 19 14093.5 20 13073.0 21 12803.0 22 12533.0 23 12742.5 24 12952.0 25 14825.0 26 19801.5 27 22905.0 28 26108.0 29 29311.0 30 34921.0 31 40531.0 32 46189.0 33 51847.0 34 63248.0 35 74649.0 36 76220.5 37 77792.0 38 81578.0 39 85364.0 40 99431.0 41 113498.0 42 128411.5 43 143325.0 44 148917.0 45 154509.0 46 148622.5 47 142736.0 48 137854.5 49 132973.0 50 127669.5 51 122366.0 52 110715.5 53 99065.0 54 90489.0 55 81913.0 56 75386.0 57 68859.0 58 64970.0 59 61081.0 60 56873.0 61 52665.0 62 44964.0 63 37263.0 64 31994.0 65 26725.0 66 20882.5 67 15040.0 68 12980.5 69 10921.0 70 9502.5 71 8084.0 72 6129.5 73 4175.0 74 3447.0 75 2365.0 76 2011.0 77 1534.5 78 1058.0 79 742.5 80 427.0 81 469.5 82 512.0 83 358.5 84 205.0 85 143.0 86 81.0 87 57.0 88 33.0 89 24.5 90 16.0 91 12.0 92 8.0 93 7.5 94 7.0 95 3.5 96 0.0 97 1.5 98 3.0 99 1.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1868982.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 21.009683093221188 #Duplication Level Percentage of deduplicated Percentage of total 1 80.41295042563887 16.894506050335785 2 7.753265867524305 3.2578731762834856 3 2.8049263729141 1.767918425842308 4 1.446202585448903 1.2153703203551434 5 0.9066641730901711 0.952436347430097 6 0.5867655813548491 0.7396655348565045 7 0.44831511913399363 0.6593271005233436 8 0.3506883351701844 0.5894280629131925 9 0.2698715869014196 0.5102924864997176 >10 2.7090582892771646 13.250789896546678 >50 1.0513339161641373 16.074672986376363 >100 1.2535736890765097 41.66597539529289 >500 0.004596521979899649 0.6114583583649946 >1k 0.0015321739932998833 0.5064100591916456 >5k 0.0 0.0 >10k+ 2.5536233221664723E-4 1.3038757991878973 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 24303 1.3003335505638898 No Hit GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT 2442 0.1306593642956433 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 2210 0.11824618963692535 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 5.3505063184129116E-5 0.0 0.0 0.03895168599804599 0.0 2 5.3505063184129116E-5 0.0 0.0 0.14473119591306927 0.0 3 5.3505063184129116E-5 0.0 0.0 0.20166058314098262 0.0 4 5.3505063184129116E-5 0.0 0.0 0.3294841790878671 0.0 5 5.3505063184129116E-5 0.0 0.0 0.5831516836438232 0.0 6 5.3505063184129116E-5 0.0 0.0 0.9331818069943959 0.0 7 5.3505063184129116E-5 0.0 0.0 1.1489142217528046 0.0 8 5.3505063184129116E-5 0.0 0.0 1.5435675677989409 0.0 9 5.3505063184129116E-5 0.0 0.0 1.682841247267229 0.0 10 5.3505063184129116E-5 0.0 0.0 1.9005533493634503 0.0 11 5.3505063184129116E-5 0.0 0.0 2.2110432310209513 0.0 12 5.3505063184129116E-5 0.0 0.0 2.4529396216763995 0.0 13 5.3505063184129116E-5 0.0 0.0 2.5674404568904357 0.0 14 5.3505063184129116E-5 0.0 0.0 2.6101910023745547 0.0 15 5.3505063184129116E-5 0.0 0.0 2.665836268086049 0.0 16 5.3505063184129116E-5 0.0 0.0 2.7862761653135237 0.0 17 5.3505063184129116E-5 0.0 0.0 2.9281715928778342 0.0 18 5.3505063184129116E-5 0.0 0.0 3.102972634300384 0.0 19 5.3505063184129116E-5 0.0 0.0 3.205488335361175 0.0 20 5.3505063184129116E-5 0.0 0.0 3.306559399715995 0.0 21 5.3505063184129116E-5 0.0 0.0 3.45032750449175 0.0 22 5.3505063184129116E-5 0.0 0.0 3.598215499132683 0.0 23 5.3505063184129116E-5 0.0 0.0 3.768147579805477 0.0 24 5.3505063184129116E-5 0.0 0.0 3.8935099428458915 0.0 25 5.3505063184129116E-5 0.0 0.0 4.00881335400769 0.0 26 5.3505063184129116E-5 0.0 0.0 4.116519046197341 0.0 27 5.3505063184129116E-5 0.0 0.0 4.222245051049181 0.0 28 5.3505063184129116E-5 0.0 0.0 4.339207119169687 0.0 29 5.3505063184129116E-5 0.0 0.0 4.464462472083733 0.0 30 5.3505063184129116E-5 0.0 0.0 4.611815416092825 0.0 31 5.3505063184129116E-5 0.0 0.0 4.749002398096932 0.0 32 5.3505063184129116E-5 0.0 0.0 4.878056610497051 0.0 33 5.3505063184129116E-5 0.0 0.0 5.0140129760479235 0.0 34 5.3505063184129116E-5 0.0 0.0 5.146438007428643 0.0 35 5.3505063184129116E-5 0.0 0.0 5.312143188109891 0.0 36 5.3505063184129116E-5 0.0 0.0 5.449811715682655 0.0 37 5.3505063184129116E-5 0.0 0.0 5.602033620441502 0.0 38 5.3505063184129116E-5 0.0 0.0 5.750724191030197 0.0 39 5.3505063184129116E-5 0.0 0.0 5.907815056538801 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TACGTAG 90 0.0 45.000004 1 TACCCGC 20 7.0344214E-4 45.0 29 GATCGAC 40 6.8193913E-9 45.0 9 CTATACG 35 1.2124838E-7 45.0 1 CACGCTA 20 7.0344214E-4 45.0 30 CAATTCG 20 7.0344214E-4 45.0 43 TAACGCG 40 6.8193913E-9 45.0 1 CGTTCGA 25 3.8917475E-5 45.0 14 CGTTCCA 20 7.0344214E-4 45.0 31 CCCGTTG 20 7.0344214E-4 45.0 11 AATGCGT 20 7.0344214E-4 45.0 25 AACGCGT 25 3.8917475E-5 45.0 42 ACTACGT 20 7.0344214E-4 45.0 13 GCGATCG 40 6.8193913E-9 45.0 9 ACGCTAG 50 2.1827873E-11 45.0 1 TTAACGC 20 7.0344214E-4 45.0 22 CGTACAC 20 7.0344214E-4 45.0 26 CGTCAAT 40 6.8193913E-9 45.0 12 GTACGAC 20 7.0344214E-4 45.0 34 TCGCACC 30 2.1662345E-6 44.999996 45 >>END_MODULE