##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547412_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 3822819 Sequences flagged as poor quality 0 Sequence length 51 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.25584104295809 31.0 31.0 33.0 30.0 34.0 2 31.68733779967087 31.0 31.0 34.0 30.0 34.0 3 31.862434240281843 31.0 31.0 34.0 30.0 34.0 4 35.645169703300105 37.0 35.0 37.0 33.0 37.0 5 35.51824295107877 37.0 35.0 37.0 33.0 37.0 6 35.54866500349611 37.0 35.0 37.0 33.0 37.0 7 35.93090517756661 37.0 35.0 37.0 35.0 37.0 8 35.90779631470912 37.0 35.0 37.0 35.0 37.0 9 37.605300957225545 39.0 37.0 39.0 35.0 39.0 10 36.63814766014295 39.0 35.0 39.0 32.0 39.0 11 36.55770231339752 39.0 35.0 39.0 32.0 39.0 12 36.34213076789668 38.0 35.0 39.0 32.0 39.0 13 36.25142231426599 39.0 35.0 39.0 32.0 39.0 14 37.35580340057952 39.0 36.0 41.0 32.0 41.0 15 37.48560237876813 39.0 36.0 41.0 32.0 41.0 16 37.527859937914926 39.0 36.0 41.0 32.0 41.0 17 37.42743614071187 39.0 36.0 41.0 32.0 41.0 18 37.30164546111129 39.0 36.0 41.0 32.0 41.0 19 37.283289373627156 39.0 36.0 41.0 32.0 41.0 20 37.1692844992138 39.0 35.0 41.0 32.0 41.0 21 37.059316959552625 39.0 35.0 41.0 31.0 41.0 22 36.97676557535159 39.0 35.0 41.0 31.0 41.0 23 36.86385675073814 39.0 35.0 41.0 31.0 41.0 24 36.73817724563993 38.0 35.0 40.0 31.0 41.0 25 36.66587641214507 38.0 35.0 40.0 31.0 41.0 26 36.55622146902587 38.0 35.0 40.0 30.0 41.0 27 36.47792506001461 38.0 35.0 40.0 30.0 41.0 28 36.552616537691165 38.0 35.0 40.0 30.0 41.0 29 36.58615958537404 38.0 35.0 41.0 30.0 41.0 30 36.53524035535033 38.0 35.0 41.0 30.0 41.0 31 36.45295029662665 38.0 35.0 41.0 30.0 41.0 32 36.37299150182104 38.0 35.0 41.0 30.0 41.0 33 36.201709523783364 38.0 35.0 41.0 30.0 41.0 34 36.000424032631415 38.0 35.0 41.0 29.0 41.0 35 35.86476733530936 38.0 35.0 40.0 29.0 41.0 36 35.735706555816535 38.0 35.0 40.0 27.0 41.0 37 35.656418731831145 38.0 35.0 40.0 27.0 41.0 38 35.564772226987465 38.0 34.0 40.0 27.0 41.0 39 35.5303873921313 38.0 34.0 40.0 27.0 41.0 40 35.36808334373142 38.0 34.0 40.0 26.0 41.0 41 35.29011418013775 38.0 34.0 40.0 26.0 41.0 42 35.223633397239055 38.0 34.0 40.0 26.0 41.0 43 35.16928292969141 38.0 34.0 40.0 26.0 41.0 44 35.045867983809856 38.0 34.0 40.0 25.0 41.0 45 34.953642063618496 38.0 34.0 40.0 25.0 41.0 46 34.86968255624972 38.0 34.0 40.0 24.0 41.0 47 34.73285473364028 37.0 33.0 40.0 24.0 41.0 48 34.68503347922044 37.0 33.0 40.0 24.0 41.0 49 34.56361234994385 37.0 33.0 40.0 24.0 41.0 50 34.49375395486943 37.0 33.0 40.0 24.0 41.0 51 34.056945149639574 36.0 33.0 40.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 7.0 12 7.0 13 22.0 14 44.0 15 108.0 16 324.0 17 747.0 18 1716.0 19 3300.0 20 5553.0 21 8745.0 22 13378.0 23 19454.0 24 27450.0 25 38683.0 26 53057.0 27 64751.0 28 73860.0 29 83646.0 30 98503.0 31 118329.0 32 145391.0 33 183001.0 34 271856.0 35 349516.0 36 310775.0 37 398503.0 38 596114.0 39 955731.0 40 248.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.612111638034655 24.282499380692624 29.00922068243357 14.096168298839155 2 30.398954279551294 26.19485777380514 29.696854598661353 13.709333347982207 3 28.12704446640032 26.159752789760642 31.80603109903974 13.907171644799297 4 25.04774617893235 28.85198069801369 31.00337735058866 15.096895772465293 5 23.080192915228263 33.06570360773032 29.697194661845096 14.156908815196326 6 22.351332877648666 41.843911521837676 25.7019492683279 10.102806332185752 7 90.88162426732734 2.6247646043404096 5.436616277150448 1.0569948511818112 8 91.45410755779963 2.000460916407499 5.408338715487184 1.1370928103056934 9 86.05625848359549 4.1465996689877285 7.916043108501867 1.881098738914921 10 33.403046285999935 28.0007240729943 29.07697173211706 9.519257908888703 11 31.83543348507999 25.559855174937656 24.695179133513776 17.90953220646858 12 29.358465572134072 23.490387590937473 28.128535512667487 19.02261132426097 13 24.21472217230269 26.749082287181263 28.60276670174549 20.433428838770553 14 20.15094096790876 28.866472621382282 29.87711424474975 21.105472165959206 15 20.314040502571533 27.404724105431093 33.41952627105809 18.861709120939285 16 23.46786494469134 25.990976815800064 32.21164800112169 18.329510238386906 17 23.820431990109917 25.37459921591893 28.55314363562596 22.25182515834519 18 23.33819623686081 26.05817853264829 30.963354529733163 19.64027070075774 19 25.27901530258168 27.407261499955922 27.095135814695908 20.218587382766486 20 26.777595277202504 26.6459908250953 28.3181338169555 18.258280080746694 21 25.930027029791365 26.50604174563326 30.00429787546834 17.559633349107035 22 25.60932128881854 23.422688858666863 30.156515388251442 20.811474464263153 23 22.8907515631789 26.087528601275658 29.827072639327156 21.194647196218288 24 21.814765491120557 26.15745082359379 33.14096220616252 18.886821479123128 25 21.79179814686492 28.26163101104185 29.85045852288586 20.09611231920737 26 21.69930096088776 29.624578092763482 27.465778526265566 21.21034242008319 27 20.389953068664774 29.21501122600887 29.869711330826803 20.52532437449955 28 19.31412394884508 28.670046894713035 31.650177526061263 20.365651630380615 29 20.416059457693393 26.391440452713038 31.4631950924174 21.72930499717617 30 21.374331350764972 27.816776049297655 31.004999190388034 19.80389340954934 31 23.450757150678598 27.764589429946852 28.81904688660384 19.96560653277071 32 23.886587358700478 26.827166025909154 28.869036174613548 20.41721044077682 33 23.495959395409514 27.860591882587173 27.780180018985988 20.86326870301733 34 20.88874728309135 27.75446601055399 30.15452732656189 21.202259379792764 35 21.484485663590142 27.80076692095545 29.594704850007286 21.12004256544712 36 23.56467831723134 29.072524752022005 27.3765511785936 19.98624575215306 37 22.052966671976883 29.33235918310545 28.43278742728861 20.18188671762906 38 21.66636714947791 29.316585483121226 28.333985993059045 20.68306137434181 39 21.638429650998386 29.50775330979573 27.890517442756245 20.963299596449637 40 23.517043312801363 27.30414387916352 28.21996019168054 20.95885261635458 41 20.661846663417755 27.156922679310743 29.14890817483119 23.032322482440314 42 21.746281997656702 27.112792941543923 28.08961135748253 23.051313703316843 43 21.534370316774087 27.288579448830824 28.286743369225693 22.890306865169393 44 20.941195489506566 28.349262677620885 28.332050248782377 22.37749158409017 45 21.10432118287578 29.403824769103636 27.30338527667671 22.18846877134387 46 21.931328687023896 28.762413287157983 27.831974257740168 21.474283768077957 47 21.372290971662537 28.2816424214696 29.064049331134957 21.28201727573291 48 21.35426762292434 27.33754854728932 30.17085035938139 21.137333470404958 49 21.72292227280444 27.733617521520117 29.371204862171084 21.17225534350436 50 21.029507282453082 29.037132022206645 29.09112359230191 20.84223710303836 51 20.608064362974023 28.796027224935315 28.298907167720994 22.297001244369667 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2179.0 1 3709.5 2 5240.0 3 22359.5 4 39479.0 5 27643.0 6 15807.0 7 15747.0 8 15687.0 9 16304.5 10 16922.0 11 17359.0 12 17796.0 13 17883.5 14 17971.0 15 17295.0 16 16619.0 17 15247.0 18 13875.0 19 15174.5 20 16474.0 21 16374.0 22 16274.0 23 19934.0 24 23594.0 25 27808.5 26 37391.5 27 42760.0 28 52843.0 29 62926.0 30 73112.5 31 83299.0 32 95942.5 33 108586.0 34 124235.5 35 139885.0 36 151098.5 37 162312.0 38 169368.5 39 176425.0 40 202610.5 41 228796.0 42 250266.0 43 271736.0 44 275531.5 45 279327.0 46 278640.5 47 277954.0 48 277870.0 49 277786.0 50 270698.5 51 263611.0 52 249452.0 53 235293.0 54 221123.0 55 206953.0 56 193521.0 57 180089.0 58 165837.5 59 151586.0 60 137617.0 61 123648.0 62 112121.5 63 100595.0 64 85922.0 65 71249.0 66 59361.5 67 47474.0 68 38320.5 69 29167.0 70 24794.5 71 20422.0 72 16544.5 73 12667.0 74 10460.5 75 6552.5 76 4851.0 77 3783.5 78 2716.0 79 2011.0 80 1306.0 81 1035.0 82 764.0 83 473.0 84 182.0 85 139.5 86 97.0 87 112.5 88 128.0 89 72.5 90 17.0 91 13.5 92 10.0 93 7.5 94 5.0 95 3.5 96 2.0 97 1.0 98 0.0 99 0.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 3822819.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 17.77821638048255 #Duplication Level Percentage of deduplicated Percentage of total 1 81.890417429032 14.558655605413703 2 6.720856744697705 2.3896969093892273 3 2.0121908673617366 1.0731949391636346 4 1.0024179448508312 0.712848125089468 5 0.6689104998900286 0.5946017803110839 6 0.4418488659296958 0.4713170847581374 7 0.34857398351581564 0.433791659248565 8 0.26273992086570896 0.37368377319531487 9 0.2348629810473703 0.3757900407142789 >10 3.243263036977309 14.602596636180623 >50 1.6110637138850117 20.893887509782523 >100 1.5597337726795515 42.40481085390775 >500 0.0022287423338327246 0.255859328495661 >1k 7.429141112775748E-4 0.23824027294057057 >5k 0.0 0.0 >10k+ 1.4858282225551495E-4 0.6210254814095592 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 23510 0.6149911884397351 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 1.0463482576601194E-4 0.0 0.0 0.014701193020124678 0.0 2 1.0463482576601194E-4 0.0 0.0 0.052578999947421 0.0 3 1.0463482576601194E-4 0.0 0.0 0.08012411783032364 0.0 4 1.0463482576601194E-4 0.0 0.0 0.1559058903913578 0.0 5 1.0463482576601194E-4 0.0 0.0 0.2820431728522852 0.0 6 1.0463482576601194E-4 0.0 0.0 0.4687640194317335 0.0 7 1.0463482576601194E-4 0.0 0.0 0.5580436845165831 0.0 8 1.0463482576601194E-4 0.0 0.0 0.753475380341052 0.0 9 1.0463482576601194E-4 0.0 0.0 0.8120185653571357 0.0 10 1.0463482576601194E-4 0.0 0.0 0.9266983343966847 0.0 11 1.3079353220751494E-4 0.0 0.0 1.065941128784805 0.0 12 1.3079353220751494E-4 0.0 0.0 1.1752845217102876 0.0 13 1.3079353220751494E-4 0.0 0.0 1.2239135569850417 0.0 14 1.3079353220751494E-4 0.0 0.0 1.2464100445247341 0.0 15 1.3079353220751494E-4 0.0 0.0 1.278899157925081 0.0 16 1.3079353220751494E-4 0.0 0.0 1.350155474271735 0.0 17 1.3079353220751494E-4 0.0 0.0 1.4301749572762927 0.0 18 1.3079353220751494E-4 0.0 0.0 1.5262035686230502 0.0 19 1.3079353220751494E-4 0.0 0.0 1.5845636426940433 0.0 20 1.3079353220751494E-4 0.0 0.0 1.6504312655137479 0.0 21 1.3079353220751494E-4 0.0 0.0 1.7374351231381868 0.0 22 1.3079353220751494E-4 0.0 0.0 1.8395587130858144 0.0 23 1.3079353220751494E-4 0.0 0.0 1.944219697558268 0.0 24 1.3079353220751494E-4 0.0 0.0 2.0268027337940926 0.0 25 1.3079353220751494E-4 0.0 0.0 2.109045706846178 0.0 26 1.5695223864901792E-4 0.0 0.0 2.1840427182139672 0.0 27 1.5695223864901792E-4 0.0 0.0 2.259955284307209 5.231741288300597E-5 28 1.5695223864901792E-4 0.0 0.0 2.3380390230350954 5.231741288300597E-5 29 1.831109450905209E-4 0.0 0.0 2.4296729716996803 5.231741288300597E-5 30 1.831109450905209E-4 0.0 0.0 2.540271982534355 5.231741288300597E-5 31 1.831109450905209E-4 0.0 0.0 2.6352280869170106 5.231741288300597E-5 32 1.831109450905209E-4 0.0 0.0 2.731492126621742 5.231741288300597E-5 33 1.831109450905209E-4 0.0 0.0 2.8296134344838193 5.231741288300597E-5 34 1.831109450905209E-4 0.0 0.0 2.932207881147394 5.231741288300597E-5 35 1.831109450905209E-4 0.0 0.0 3.053584279035968 5.231741288300597E-5 36 1.831109450905209E-4 0.0 0.0 3.1616982127587 5.231741288300597E-5 37 1.831109450905209E-4 0.0 0.0 3.274494554934461 5.231741288300597E-5 38 1.831109450905209E-4 0.0 0.0 3.403116914507331 5.231741288300597E-5 39 1.831109450905209E-4 0.0 0.0 3.5815454511448226 5.231741288300597E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTTT 12685 0.0 41.594402 1 TACGGGA 1125 0.0 40.4 4 ATAGGGT 4315 0.0 39.88992 4 CGTTCGA 80 0.0 39.375004 14 CGTTAGG 710 0.0 39.295776 2 AAGGGTA 4215 0.0 38.91459 5 TAGGGCG 1220 0.0 38.913933 5 CGCAATA 35 6.2521067E-6 38.571426 28 GGGCGAT 6160 0.0 38.242695 7 ACGGGAC 870 0.0 38.01724 5 TAGGGTA 3995 0.0 38.01627 5 TAGGGTC 3045 0.0 37.980293 5 ACGGGTA 1325 0.0 37.528297 5 TAGGGAC 3115 0.0 37.41573 5 GCGTAAG 205 0.0 37.317074 1 AGGGTAC 3450 0.0 37.304348 6 TAGGGAT 4490 0.0 37.18263 5 TAAGGGT 3770 0.0 37.181698 4 TATGGGT 3445 0.0 37.09724 4 TACGGGT 1315 0.0 36.958176 4 >>END_MODULE