SRR1547410_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547410_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1644674
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	31975	1.9441542822468163	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	2778	0.168908853669481	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AAATCGT	45	3.8562575E-10	45.000004	12
CCGCATC	45	3.8562575E-10	45.000004	20
TGATCCG	40	6.8175723E-9	45.0	1
TCGCCGT	20	7.034176E-4	45.0	27
TCGCAAG	50	2.1827873E-11	45.0	1
TTGTGCG	35	1.2123564E-7	45.0	1
TAGCGTC	20	7.034176E-4	45.0	32
GCCGGAT	40	6.8175723E-9	45.0	19
CCTACCG	25	3.8915416E-5	45.0	35
CCGTCGA	40	6.8175723E-9	45.0	30
CGTTAGT	35	1.2123564E-7	45.0	44
AATGCGT	20	7.034176E-4	45.0	44
AAGCCGT	25	3.8915416E-5	45.0	35
ACGGCAT	40	6.8175723E-9	45.0	26
CTACGTC	20	7.034176E-4	45.0	30
GTATGCG	20	7.034176E-4	45.0	1
AACGCGT	20	7.034176E-4	45.0	43
CTACCGT	25	3.8915416E-5	45.0	36
ACGTAAG	25	3.8915416E-5	45.0	1
CGGTCCG	55	1.8189894E-12	45.0	29