##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547406_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 4051921 Sequences flagged as poor quality 0 Sequence length 51 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.293440074473317 31.0 31.0 33.0 30.0 34.0 2 31.6919029270314 31.0 31.0 34.0 30.0 34.0 3 31.668055966540315 31.0 31.0 34.0 30.0 34.0 4 35.535558319128135 37.0 35.0 37.0 33.0 37.0 5 35.469944009273625 37.0 35.0 37.0 33.0 37.0 6 35.52220341906962 37.0 35.0 37.0 33.0 37.0 7 35.94065481533327 37.0 35.0 37.0 35.0 37.0 8 35.932057905373775 37.0 35.0 37.0 35.0 37.0 9 37.66809742835559 39.0 37.0 39.0 35.0 39.0 10 36.86237293372699 39.0 37.0 39.0 32.0 39.0 11 36.65615889352236 39.0 35.0 39.0 32.0 39.0 12 36.43803247891556 39.0 35.0 39.0 32.0 39.0 13 36.32318991411728 39.0 35.0 39.0 32.0 39.0 14 37.45713033398233 40.0 36.0 41.0 32.0 41.0 15 37.57055554636924 40.0 36.0 41.0 32.0 41.0 16 37.62317256432196 40.0 36.0 41.0 32.0 41.0 17 37.54387486824151 39.0 36.0 41.0 32.0 41.0 18 37.32877294498091 39.0 36.0 41.0 32.0 41.0 19 37.15444007916245 38.0 36.0 41.0 32.0 41.0 20 36.88749928737505 38.0 35.0 41.0 32.0 41.0 21 36.77836315170014 38.0 35.0 40.0 31.0 41.0 22 36.69978067193314 38.0 35.0 40.0 31.0 41.0 23 36.598616063837376 38.0 35.0 40.0 31.0 41.0 24 36.419467704330856 38.0 35.0 40.0 31.0 41.0 25 36.31414630245752 38.0 35.0 40.0 31.0 41.0 26 36.16512266650806 38.0 35.0 40.0 30.0 41.0 27 36.08099146059363 38.0 35.0 40.0 30.0 41.0 28 36.08791953248842 38.0 35.0 40.0 30.0 41.0 29 36.05651393499528 38.0 35.0 40.0 30.0 41.0 30 35.932501398719275 38.0 35.0 40.0 30.0 41.0 31 35.759904746415344 38.0 35.0 40.0 29.0 41.0 32 35.5018353023171 38.0 34.0 40.0 27.0 41.0 33 35.0928265876852 38.0 34.0 40.0 25.0 41.0 34 34.643213182093135 38.0 34.0 40.0 23.0 41.0 35 34.31031429289959 38.0 33.0 40.0 21.0 41.0 36 34.06245136566088 38.0 33.0 40.0 18.0 41.0 37 33.930963116013366 38.0 33.0 40.0 18.0 41.0 38 33.81527132439157 37.0 33.0 40.0 18.0 41.0 39 33.75221259249625 37.0 33.0 40.0 18.0 41.0 40 33.593288220574884 37.0 33.0 40.0 17.0 41.0 41 33.480129548429005 37.0 33.0 40.0 15.0 41.0 42 33.38915590901205 37.0 33.0 40.0 15.0 41.0 43 33.314819316566144 37.0 33.0 40.0 15.0 41.0 44 33.17427091989207 37.0 32.0 40.0 15.0 41.0 45 33.07440470828528 36.0 32.0 40.0 15.0 41.0 46 32.985345963062954 36.0 32.0 40.0 15.0 41.0 47 32.84318573832017 36.0 31.0 40.0 14.0 41.0 48 32.77923533059998 36.0 31.0 40.0 13.0 41.0 49 32.64849413401693 36.0 31.0 40.0 13.0 41.0 50 32.56531260110945 36.0 31.0 40.0 12.0 41.0 51 32.16283288840034 35.0 31.0 39.0 11.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 2.0 11 7.0 12 3.0 13 18.0 14 56.0 15 187.0 16 454.0 17 1148.0 18 2606.0 19 5262.0 20 8897.0 21 14196.0 22 21821.0 23 32919.0 24 49520.0 25 75434.0 26 105657.0 27 115267.0 28 109701.0 29 107711.0 30 114774.0 31 130602.0 32 154665.0 33 191699.0 34 280005.0 35 378798.0 36 338434.0 37 387114.0 38 553378.0 39 871341.0 40 244.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 29.24099458010164 23.282462812083455 26.889887537294037 20.58665507052087 2 35.81019965591629 24.451439206243162 27.69646792225219 12.04189321558836 3 25.92271665711153 23.62792858004882 38.05878742453271 12.390567338306942 4 22.404879068471473 26.265368944754847 37.853279962763345 13.476472024010338 5 20.923853155083723 30.136668508591356 36.37097070747431 12.568507628850611 6 19.434090644906455 38.47449148194153 32.68425026055542 9.407167612596593 7 82.86792857017696 2.7171803201493807 13.33436658809488 1.080524521578777 8 83.5059469323316 2.205373698055811 12.926239183834037 1.362440185778548 9 79.38511140765084 4.1779442392879815 14.591079144929035 1.8458652081321427 10 34.35039824320366 25.775082979159762 27.868016182941375 12.006502594695208 11 27.84358332751305 25.32825788064476 30.696723850242886 16.131434941599306 12 27.170717296808107 23.00923438536931 31.836331458584706 17.983716859237877 13 21.889814732320794 27.257540312360483 32.89262056195074 17.960024393367984 14 18.527138115476586 29.440578925403532 33.66682124355337 18.365461715566518 15 18.26467001701168 27.116545460782675 38.05335790110419 16.565426621101448 16 19.924179173285957 25.46086165056031 37.5626030221221 17.05235615403163 17 19.87084644542675 26.255052850240663 33.42634271497396 20.447757989358628 18 20.61891137561665 26.54489068271568 35.29506128080977 17.5411366608579 19 22.530424457929954 28.723462278756173 31.118276985163334 17.627836278150536 20 23.8704555197399 27.660509669364234 32.20963587394719 16.25939893694867 21 21.88278103151567 28.336386617606806 33.32093592150488 16.459896429372638 22 21.65883786974129 25.75933736121706 33.04595523950245 19.535869529539198 23 19.812972661609148 28.420124676665708 32.79400067276731 18.97290198895783 24 18.94000401291141 27.298656612505525 36.931815797988165 16.829523576594905 25 19.153137487132646 28.952267331964272 33.79577242498065 18.098822755922438 26 18.834918054917654 31.00307236987098 31.580230710322336 18.581778864889024 27 18.109977958602848 30.869678851093095 32.65399300726742 18.36635018303664 28 17.089523709865023 29.68814051409196 35.34402571027421 17.878310065768805 29 18.363339265499008 27.160722037769247 34.77836808763053 19.697570609101213 30 19.12569371416669 29.736142437130436 33.56647377873359 17.571690069969282 31 20.857859765775295 29.049480480986674 31.48849644403235 18.60416330920568 32 22.138264788479344 28.26049668786731 31.115809019968555 18.485429503684795 33 20.6740210384161 29.5258471228832 30.64124399266422 19.158887846036485 34 18.515415280801378 30.110434038570844 31.001344794234637 20.372805886393145 35 18.99496559779917 29.446378643611265 31.29268808547847 20.2659676731111 36 21.17524008982406 30.711334204195985 28.698165635509675 19.41526007047028 37 19.064932411071194 31.828705446132833 29.718422447031912 19.387939695764057 38 19.352549074870907 31.697162901251037 29.34630265496292 19.60398536891514 39 19.093486768374802 31.79489432296434 28.89774998081157 20.213868927849283 40 21.299205981557883 30.222627736325556 28.750535856942918 19.72763042517364 41 18.541279556042678 29.06411551459172 30.42021302981968 21.97439189954592 42 19.814009206990956 29.94379702861926 28.543942490487844 21.698251273901935 43 19.746806514737084 30.532949679917255 28.5753596874174 21.14488411792826 44 19.697990163184325 31.005046742026803 28.346529954557358 20.95043314023151 45 19.056911524188155 32.391821064625894 27.041593357817195 21.50967405336876 46 20.28203412652912 32.20931503847188 27.15593418529137 20.352716649707634 47 19.706085089023205 30.347556134485348 29.208071924403267 20.738286852088184 48 19.90357166390954 29.407483512141525 30.27852714798734 20.4104176759616 49 19.74256161460206 29.44033212888405 29.634462271105484 21.182643985408404 50 19.110910602649952 30.825625672366268 30.026695979511942 20.03676774547184 51 17.827025749021267 31.439309897700372 28.935263051772232 21.798401301506125 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 3036.0 1 3841.0 2 4646.0 3 59032.5 4 113419.0 5 77509.0 6 41599.0 7 42827.5 8 44056.0 9 48955.5 10 53855.0 11 57089.5 12 60324.0 13 60812.0 14 61300.0 15 58609.0 16 55918.0 17 51713.5 18 47509.0 19 43893.0 20 40277.0 21 38482.0 22 36687.0 23 36269.0 24 35851.0 25 38079.5 26 43512.5 27 46717.0 28 53749.0 29 60781.0 30 67605.5 31 74430.0 32 83647.0 33 92864.0 34 108089.5 35 123315.0 36 132388.5 37 141462.0 38 157059.5 39 172657.0 40 194525.5 41 216394.0 42 243332.0 43 270270.0 44 279258.0 45 288246.0 46 293170.5 47 298095.0 48 301164.0 49 304233.0 50 294124.0 51 284015.0 52 262740.0 53 241465.0 54 221124.0 55 200783.0 56 184809.0 57 168835.0 58 151321.0 59 133807.0 60 118994.5 61 104182.0 62 89390.5 63 74599.0 64 61035.5 65 47472.0 66 36761.0 67 26050.0 68 21486.0 69 16922.0 70 13262.5 71 9603.0 72 7850.0 73 6097.0 74 5159.5 75 3373.0 76 2524.0 77 2033.5 78 1543.0 79 1124.5 80 706.0 81 585.5 82 465.0 83 333.0 84 201.0 85 142.0 86 83.0 87 63.0 88 43.0 89 35.5 90 28.0 91 20.5 92 13.0 93 11.5 94 10.0 95 7.0 96 4.0 97 2.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 4051921.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 24.006601397793435 #Duplication Level Percentage of deduplicated Percentage of total 1 80.32920537162966 19.284312139582003 2 7.06337200036765 3.3913511227432207 3 2.6082817617448026 1.8784794176202566 4 1.471427750927956 1.4129591800871648 5 0.9894718721362932 1.1876928414352208 6 0.7351217882532627 1.058866544965751 7 0.591980173137583 0.994800243633749 8 0.4659748676684956 0.8949178327605692 9 0.36447348055785495 0.7874792611036954 >10 3.5044713121281212 19.108599570285357 >50 1.0651271708990153 18.310823124182217 >100 0.8066879624086433 28.676698506756672 >500 0.0030411941924163603 0.48314160930382705 >1k 0.0012584251830683269 0.48913336080251524 >5k 0.0 0.0 >10k+ 1.0486876525569391E-4 2.0407452447379013 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 81061 2.0005572665409814 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 2.467965194780451E-5 0.0 0.0 0.03361368595290974 0.0 2 2.467965194780451E-5 0.0 0.0 0.09294356923543179 0.0 3 2.467965194780451E-5 0.0 0.0 0.146572452918011 0.0 4 2.467965194780451E-5 0.0 0.0 0.2641709944492995 0.0 5 2.467965194780451E-5 0.0 0.0 0.4770576721510612 0.0 6 2.467965194780451E-5 0.0 0.0 0.9505861540735864 0.0 7 2.467965194780451E-5 0.0 0.0 1.2370181945798056 0.0 8 2.467965194780451E-5 0.0 0.0 1.7140018277750233 0.0 9 2.467965194780451E-5 0.0 0.0 1.928788838676766 0.0 10 2.467965194780451E-5 0.0 0.0 2.207693585338905 0.0 11 2.467965194780451E-5 0.0 0.0 2.4652257534142445 0.0 12 2.467965194780451E-5 0.0 0.0 2.653062584388985 0.0 13 2.467965194780451E-5 0.0 0.0 2.764417173977479 0.0 14 2.467965194780451E-5 0.0 0.0 2.822710511878193 0.0 15 2.467965194780451E-5 0.0 0.0 2.875771763565973 0.0 16 2.467965194780451E-5 0.0 0.0 2.9708624625208637 0.0 17 2.467965194780451E-5 0.0 0.0 3.0868074673716492 0.0 18 2.467965194780451E-5 0.0 0.0 3.223187224035217 0.0 19 2.467965194780451E-5 0.0 0.0 3.311885893135626 0.0 20 2.467965194780451E-5 0.0 0.0 3.4095679555450364 0.0 21 2.467965194780451E-5 0.0 0.0 3.535631617694422 0.0 22 2.467965194780451E-5 0.0 0.0 3.681167525230625 0.0 23 2.467965194780451E-5 0.0 0.0 3.8486436433484266 0.0 24 2.467965194780451E-5 0.0 0.0 3.9818397249107274 0.0 25 2.467965194780451E-5 0.0 0.0 4.1049665084783244 0.0 26 2.467965194780451E-5 0.0 0.0 4.218961820825233 0.0 27 2.467965194780451E-5 0.0 0.0 4.340484427016222 0.0 28 2.467965194780451E-5 0.0 0.0 4.477061620895372 0.0 29 2.467965194780451E-5 0.0 0.0 4.626916467522442 0.0 30 2.467965194780451E-5 0.0 0.0 4.79454066355193 2.467965194780451E-5 31 2.467965194780451E-5 0.0 0.0 4.9483936137945435 2.467965194780451E-5 32 2.467965194780451E-5 0.0 0.0 5.100938542483923 2.467965194780451E-5 33 2.467965194780451E-5 0.0 0.0 5.263380011604372 2.467965194780451E-5 34 2.467965194780451E-5 0.0 0.0 5.429079194781932 2.467965194780451E-5 35 2.467965194780451E-5 0.0 0.0 5.609215974348957 2.467965194780451E-5 36 4.935930389560902E-5 0.0 0.0 5.779974486175816 2.467965194780451E-5 37 4.935930389560902E-5 0.0 0.0 5.959864469223364 2.467965194780451E-5 38 4.935930389560902E-5 0.0 0.0 6.156610654551261 2.467965194780451E-5 39 4.935930389560902E-5 0.0 0.0 6.41123062369676 2.467965194780451E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTTT 45435 0.0 44.04424 1 TACGGGA 1080 0.0 40.625 4 AGGGCGA 3530 0.0 39.900852 6 CTTAACG 125 0.0 39.6 1 GTTTTTT 51405 0.0 39.344906 2 GGCGATA 1365 0.0 38.736263 8 GGGCGAT 6255 0.0 38.705036 7 TAGGGTC 1970 0.0 38.375633 5 TAGGGTG 3040 0.0 38.19079 5 ACGGGTA 835 0.0 37.99401 5 ACGGGAT 1375 0.0 37.636364 5 GCGCGAC 395 0.0 37.594936 9 TGGGCGA 1880 0.0 37.57979 6 CGTTCGC 30 1.1404308E-4 37.499996 21 CCGTCGA 30 1.1404308E-4 37.499996 10 GGCGATT 1810 0.0 37.41713 8 AAGGGCG 1505 0.0 37.225914 5 CGACCCG 405 0.0 37.22222 32 CGGGTAT 740 0.0 37.094593 6 CGTAAGG 480 0.0 37.031246 2 >>END_MODULE