SRR1547397_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547397_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1781882
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	17578	0.9864850758916697	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	3261	0.18300875142125012	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1821	0.10219531933090967	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TACGATA	30	2.1661763E-6	45.000004	25
CGGGTAC	45	3.8562575E-10	45.0	6
CGAAAGT	25	3.891673E-5	45.0	45
GATCACG	70	0.0	45.0	1
TACGCTA	20	7.0343324E-4	45.0	15
TACGCGA	20	7.0343324E-4	45.0	37
CGAATGT	20	7.0343324E-4	45.0	44
ACTCGTT	20	7.0343324E-4	45.0	33
CATACGT	20	7.0343324E-4	45.0	23
TTACGTC	45	3.8562575E-10	45.0	29
CGTAACA	25	3.891673E-5	45.0	40
ACGTAAG	95	0.0	45.0	1
GCGTACA	25	3.891673E-5	45.0	37
CGTTAGG	215	0.0	42.906975	2
CGTTTTT	9240	0.0	42.126625	1
GCGATAT	225	0.0	42.0	9
GTATGCG	70	0.0	41.785713	1
TTTGACG	130	0.0	41.538464	1
CGAAAGG	245	0.0	41.32653	2
CTAACGG	60	3.6379788E-12	41.250004	2