SRR1547394_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547394_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1580476
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	15558	0.9843869821496815	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	3537	0.22379333820950145	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTGATCG	20	7.0340896E-4	45.000004	20
GGTACGC	20	7.0340896E-4	45.000004	8
CGAACGC	20	7.0340896E-4	45.000004	33
CTCGTTA	20	7.0340896E-4	45.000004	34
GCACGAT	25	3.8914717E-5	45.000004	15
TTCGTTA	25	3.8914717E-5	45.000004	13
ACCTATC	30	2.1660198E-6	45.000004	30
CCCGTAG	25	3.8914717E-5	45.000004	1
CCGTAGT	25	3.8914717E-5	45.000004	17
TACGCCG	20	7.0340896E-4	45.000004	1
CGTAGTC	25	3.8914717E-5	45.000004	18
CGTAGGT	25	3.8914717E-5	45.000004	21
TATTACG	30	2.1660198E-6	45.000004	1
ACGTCGA	30	2.1660198E-6	45.000004	35
ACGTCCA	20	7.0340896E-4	45.000004	11
ATGCGTC	55	1.8189894E-12	45.000004	12
AACCTCG	25	3.8914717E-5	45.000004	35
GTATAAC	25	3.8914717E-5	45.000004	39
CGACTTA	20	7.0340896E-4	45.000004	34
CTTACGA	25	3.8914717E-5	45.000004	34