FastQCFastQC Report
Thu 26 May 2016
SRR1547391_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1547391_1.fastq.gz
File typeConventional base calls
EncodingIllumina 1.5
Total Sequences1397920
Sequences flagged as poor quality0
Sequence length51
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT160511.1482059059173628No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC49920.35710198008469723No Hit
GAGCTGTCTCTTATACACATCTGACGCGCTGTCTTTCGTATGCCGTCTTCT16400.11731715691885086No Hit

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CAGCGCA302.1658398E-645.00000442
CCGCTAG302.1658398E-645.0000041
CACTACC302.1658398E-645.00000424
CCGGTAA600.045.00000420
AATACGA302.1658398E-645.00000420
TCGCGTG302.1658398E-645.00000445
CTTCGTC207.033811E-445.025
CGACGTG253.8912407E-545.03
CCCTATT253.8912407E-545.011
CGGTTTA207.033811E-445.021
CATGACG253.8912407E-545.01
CTATACG351.2121745E-745.01
CGTGAAT207.033811E-445.015
CGTTGGC207.033811E-445.040
ATTACGT253.8912407E-545.027
ATTACGC253.8912407E-545.012
ATTACGA207.033811E-445.014
CACGCCC207.033811E-445.010
CGTCTCA207.033811E-445.032
TCGATTG253.8912407E-545.01