##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547388_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 3555977 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.27997087720196 31.0 31.0 33.0 30.0 34.0 2 31.68567710083614 31.0 31.0 34.0 30.0 34.0 3 31.801299614705044 31.0 31.0 34.0 30.0 34.0 4 35.582246454349956 37.0 35.0 37.0 33.0 37.0 5 35.47484924677522 37.0 35.0 37.0 33.0 37.0 6 35.50263176617847 37.0 35.0 37.0 33.0 37.0 7 35.899430733100914 37.0 35.0 37.0 35.0 37.0 8 35.8969883663477 37.0 35.0 37.0 35.0 37.0 9 37.65052108042319 39.0 37.0 39.0 35.0 39.0 10 36.873260991283125 39.0 37.0 39.0 32.0 39.0 11 36.61297499955708 39.0 35.0 39.0 32.0 39.0 12 36.14765477954441 38.0 35.0 39.0 32.0 39.0 13 35.93119303077607 38.0 35.0 39.0 31.0 39.0 14 36.85755391556245 39.0 35.0 41.0 31.0 41.0 15 37.050155836216035 39.0 35.0 41.0 31.0 41.0 16 37.16037449061116 39.0 35.0 41.0 32.0 41.0 17 37.08580651674631 39.0 35.0 41.0 32.0 41.0 18 36.976549060919126 39.0 35.0 41.0 31.0 41.0 19 36.9208571933958 39.0 35.0 41.0 31.0 41.0 20 36.792459849993406 38.0 35.0 41.0 31.0 41.0 21 36.6800980433788 38.0 35.0 41.0 31.0 41.0 22 36.60655735399863 38.0 35.0 40.0 31.0 41.0 23 36.5048350987647 38.0 35.0 40.0 30.0 41.0 24 36.39253825320017 38.0 35.0 40.0 30.0 41.0 25 36.26611870661706 38.0 35.0 40.0 30.0 41.0 26 36.051059385367225 38.0 35.0 40.0 30.0 41.0 27 36.07345576194672 38.0 35.0 40.0 30.0 41.0 28 36.12339843592914 38.0 35.0 40.0 30.0 41.0 29 36.141717452053264 38.0 35.0 40.0 30.0 41.0 30 36.11771814047166 38.0 35.0 40.0 30.0 41.0 31 36.02723836515253 38.0 35.0 40.0 30.0 41.0 32 35.90026960241869 38.0 34.0 40.0 29.0 41.0 33 35.74776664753456 38.0 34.0 40.0 29.0 41.0 34 35.54724622797054 38.0 34.0 40.0 27.0 41.0 35 35.432027260018835 38.0 34.0 40.0 27.0 41.0 36 35.2105848828606 38.0 34.0 40.0 26.0 41.0 37 35.17848821856834 38.0 34.0 40.0 26.0 41.0 38 35.08178230624101 38.0 34.0 40.0 26.0 41.0 39 34.948154332831734 38.0 34.0 40.0 25.0 41.0 40 34.827811315989955 37.0 34.0 40.0 24.0 41.0 41 34.78930009952258 37.0 34.0 40.0 24.0 41.0 42 34.71230297608786 37.0 33.0 40.0 24.0 41.0 43 34.608836333868304 37.0 33.0 40.0 24.0 41.0 44 34.51914312156687 37.0 33.0 40.0 24.0 41.0 45 34.36854681568526 37.0 33.0 40.0 23.0 41.0 46 34.30294712254888 36.0 33.0 40.0 23.0 41.0 47 34.25352413696714 36.0 33.0 40.0 23.0 41.0 48 34.13961507625049 36.0 33.0 40.0 23.0 41.0 49 34.0093895432957 36.0 33.0 40.0 23.0 41.0 50 33.89753083329842 36.0 33.0 40.0 23.0 41.0 51 33.431024722600846 35.0 32.0 39.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 3.0 10 3.0 11 2.0 12 5.0 13 19.0 14 56.0 15 157.0 16 441.0 17 1004.0 18 2066.0 19 3852.0 20 6635.0 21 10176.0 22 15340.0 23 21424.0 24 29835.0 25 41477.0 26 55961.0 27 67199.0 28 75356.0 29 86789.0 30 100753.0 31 120670.0 32 147757.0 33 187360.0 34 287526.0 35 353531.0 36 286755.0 37 359586.0 38 514942.0 39 779068.0 40 229.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.46588012239674 23.93584097984886 28.40513310406676 14.193145793687641 2 31.257204419488655 25.410934885124398 29.36635979366571 13.965500901721242 3 28.81863409127787 25.675981593806707 31.80824847854753 13.697135836367897 4 25.385906601758112 28.609746351002833 30.994773025809785 15.009574021429273 5 23.271297873973875 32.38814536764439 29.926908976070433 14.413647782311303 6 21.999636105632856 41.149394385846705 26.699722748487968 10.151246760032475 7 90.43269964906972 2.739134701939861 5.731673742546704 1.0964919064437144 8 91.16015092336086 2.1610657211787365 5.501357292243454 1.1774260632169444 9 86.55972746730363 4.174520813829786 7.016299599238128 2.2494521196284456 10 41.10383728578672 30.296371433223555 16.197433222993286 12.402358057996437 11 34.66588788397675 24.783765474298626 23.892758586458797 16.657588055265823 12 32.15948809567666 22.07809555573616 26.9504555288181 18.811960819769084 13 25.130421259755053 27.494750387868088 28.27791068389925 19.09691766847761 14 21.185288881227297 28.311459832276753 30.71355635877285 19.789694927723097 15 21.70390865857681 24.50901679060354 35.488615365060014 18.29845918575964 16 25.300332369978772 23.62903359611156 32.72968300976075 18.340951024148918 17 25.606408590381776 23.867167869758436 27.835191284983 22.691232254876788 18 26.194938831156673 24.210983366877795 29.84515929096279 19.748918511002742 19 27.442415966132515 25.78278768394734 26.801945006955897 19.972851342964255 20 28.448103010790003 26.506808114900632 26.73293443686503 18.312154437444335 21 26.79634879528186 26.447499519822543 28.48272078250225 18.27343090239335 22 26.17269459279405 23.298322795676125 28.95159333145293 21.577389280076893 23 24.199200388528947 26.202391072833148 28.969281859809552 20.62912667882835 24 23.931538364843192 25.188239406497846 31.743428036795514 19.136794191863444 25 23.56339762602514 25.98891950088541 29.50232805217807 20.945354820911383 26 22.10115532243319 28.562698802607557 27.40897930442182 21.927166570537434 27 21.46540880326279 27.973493641831766 29.227326273482646 21.3337712814228 28 19.876281539503772 27.913172666752345 30.98166832912586 21.22887746461802 29 21.339564344763758 25.986669767549113 30.597048293619444 22.076717594067677 30 23.205521295553936 26.836900238668587 29.97263480613064 19.98494365964684 31 25.546762535303237 26.107396082708075 28.340397027314857 20.005444354673834 32 26.900398962085525 25.604805655379657 27.38428848105598 20.110506901478832 33 26.334169203006656 26.298229712959337 27.020084775576446 20.347516308457564 34 22.175537130864456 26.93431369213018 29.283653971890146 21.60649520511522 35 22.0982025474293 28.138483460382336 29.18671858676251 20.576595405425852 36 25.780116125610487 28.257831813872812 26.090382474352335 19.871669586164366 37 22.81252100336982 29.48568002548948 27.162830355764395 20.53896861537631 38 23.480466830915947 28.522372332554458 27.089742144001494 20.9074186925281 39 22.84831988508362 28.525943784225827 26.55467119163032 22.071065139060238 40 25.284612358291408 26.37502998472712 26.429304801465253 21.911052855516218 41 21.67007829353227 25.734840242217537 27.96958473015995 24.625496734090238 42 22.487040832941272 26.42548025479355 27.215192899166667 23.87228601309851 43 22.117128429120886 26.120613266058808 27.918825121759788 23.84343318306052 44 22.417636559516556 26.512544934908185 28.03808911025015 23.031729395325108 45 21.39901354817537 28.59996001098995 26.324720322994217 23.676306117840472 46 22.520674346318888 28.316184272282975 27.10264998901849 22.060491392379646 47 21.622665163469843 27.132402712390995 29.176201083415332 22.06873104072383 48 22.723206589918888 26.927873830455034 28.951059019785564 21.397860559840517 49 22.68917937320742 26.168954411122456 29.01019888486343 22.131667330806696 50 21.66226047018864 28.32200545729064 27.896215301730017 22.119518770790698 51 20.91458971753754 28.75848184619867 27.264855762565393 23.062072673698395 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1764.0 1 3183.5 2 4603.0 3 20640.0 4 36677.0 5 25135.0 6 13593.0 7 13535.0 8 13477.0 9 14037.0 10 14597.0 11 15123.5 12 15650.0 13 15639.5 14 15629.0 15 15146.5 16 14664.0 17 13899.0 18 13134.0 19 12888.5 20 12643.0 21 14176.0 22 15709.0 23 17563.0 24 19417.0 25 21813.0 26 27569.5 27 30930.0 28 39785.0 29 48640.0 30 53710.5 31 58781.0 32 69824.5 33 80868.0 34 93623.0 35 106378.0 36 111066.5 37 115755.0 38 131603.5 39 147452.0 40 164440.5 41 181429.0 42 204021.5 43 226614.0 44 235343.0 45 244072.0 46 248591.0 47 253110.0 48 255252.0 49 257394.0 50 253064.0 51 248734.0 52 242534.5 53 236335.0 54 222884.0 55 209433.0 56 204392.5 57 199352.0 58 190450.0 59 181548.0 60 164082.5 61 146617.0 62 130161.0 63 113705.0 64 97527.0 65 81349.0 66 70789.0 67 60229.0 68 49685.0 69 39141.0 70 32507.5 71 25874.0 72 21676.0 73 17478.0 74 15006.5 75 10620.5 76 8706.0 77 6254.5 78 3803.0 79 3079.5 80 2356.0 81 1517.5 82 679.0 83 542.5 84 406.0 85 323.0 86 240.0 87 183.0 88 126.0 89 80.5 90 35.0 91 60.5 92 86.0 93 49.0 94 12.0 95 8.0 96 4.0 97 2.0 98 0.0 99 2.5 100 5.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 3555977.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 19.439288699712787 #Duplication Level Percentage of deduplicated Percentage of total 1 81.18458827210675 15.781706493887999 2 6.196507886637564 2.409114114767895 3 1.9482212642170964 1.1361610681810668 4 1.0547328409169352 0.8201302478261017 5 0.6874237800609764 0.6681514659826592 6 0.4769119774006905 0.5562497767825753 7 0.3796391416057772 0.5165940412770093 8 0.3224440899891342 0.5014467003851959 9 0.2672428192051717 0.4675509283909033 >10 4.42691727950825 22.21182056312923 >50 2.09373246518279 29.203906700521287 >100 0.9594437062715064 24.6549179559243 >500 0.0014629845982324708 0.19836467527871338 >1k 5.851938392929883E-4 0.2302452202231489 >5k 0.0 0.0 >10k+ 1.4629845982324708E-4 0.6436400474419843 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 22632 0.6364495608379919 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 5.6243333407387056E-5 0.0 0.0 0.016226201688031166 0.0 2 5.6243333407387056E-5 0.0 0.0 0.049887836732352316 0.0 3 5.6243333407387056E-5 0.0 0.0 0.07334130676323272 0.0 4 5.6243333407387056E-5 0.0 0.0 0.13931473685009774 0.0 5 5.6243333407387056E-5 0.0 0.0 0.2437867286543192 0.0 6 5.6243333407387056E-5 0.0 0.0 0.4488780439243561 0.0 7 5.6243333407387056E-5 0.0 0.0 0.5694918724164977 0.0 8 8.436500011108059E-5 0.0 0.0 0.8181998927439632 0.0 9 8.436500011108059E-5 0.0 8.436500011108059E-5 0.9441287162431028 0.0 10 8.436500011108059E-5 0.0 8.436500011108059E-5 1.1212389731429646 0.0 11 8.436500011108059E-5 0.0 8.436500011108059E-5 1.3032986433826765 0.0 12 8.436500011108059E-5 0.0 8.436500011108059E-5 1.4347111918890365 0.0 13 8.436500011108059E-5 0.0 8.436500011108059E-5 1.5004596486422719 0.0 14 8.436500011108059E-5 0.0 8.436500011108059E-5 1.5426140270311084 0.0 15 8.436500011108059E-5 0.0 8.436500011108059E-5 1.581196953748576 0.0 16 8.436500011108059E-5 0.0 8.436500011108059E-5 1.6448362854990344 0.0 17 8.436500011108059E-5 0.0 8.436500011108059E-5 1.7194993105973408 0.0 18 8.436500011108059E-5 0.0 8.436500011108059E-5 1.8119914723857888 0.0 19 8.436500011108059E-5 0.0 8.436500011108059E-5 1.8764182108039507 0.0 20 8.436500011108059E-5 0.0 8.436500011108059E-5 1.9516999125697383 0.0 21 8.436500011108059E-5 0.0 8.436500011108059E-5 2.050435084366406 0.0 22 8.436500011108059E-5 0.0 8.436500011108059E-5 2.1576067561741823 0.0 23 8.436500011108059E-5 0.0 8.436500011108059E-5 2.2740304563274734 0.0 24 8.436500011108059E-5 0.0 8.436500011108059E-5 2.365172778114144 0.0 25 8.436500011108059E-5 0.0 8.436500011108059E-5 2.4528561348962605 0.0 26 8.436500011108059E-5 0.0 8.436500011108059E-5 2.5353369833381936 0.0 27 8.436500011108059E-5 0.0 8.436500011108059E-5 2.630191365129752 0.0 28 8.436500011108059E-5 0.0 8.436500011108059E-5 2.725608180255384 0.0 29 8.436500011108059E-5 0.0 8.436500011108059E-5 2.8480780387499696 0.0 30 8.436500011108059E-5 0.0 8.436500011108059E-5 2.995041868943472 0.0 31 1.1248666681477411E-4 0.0 8.436500011108059E-5 3.108709645759801 0.0 32 1.1248666681477411E-4 0.0 8.436500011108059E-5 3.2214212859082045 0.0 33 1.1248666681477411E-4 0.0 8.436500011108059E-5 3.3386042710624957 0.0 34 1.1248666681477411E-4 0.0 8.436500011108059E-5 3.4611866162238956 0.0 35 1.1248666681477411E-4 0.0 8.436500011108059E-5 3.598982783071994 0.0 36 1.4060833351846764E-4 0.0 8.436500011108059E-5 3.7220713182340606 0.0 37 1.4060833351846764E-4 0.0 8.436500011108059E-5 3.8516559584046806 0.0 38 1.4060833351846764E-4 0.0 8.436500011108059E-5 4.041983398655278 0.0 39 1.4060833351846764E-4 0.0 8.436500011108059E-5 4.467407972548754 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TTACGCG 105 0.0 42.857143 1 CGTTTTT 12555 0.0 40.91398 1 CGCGTAA 40 3.4609548E-7 39.375 31 GGGCGAT 7540 0.0 39.240715 7 CACGACC 1365 0.0 38.57143 27 ACGGGAC 910 0.0 38.571426 5 AGGGCGA 4280 0.0 38.3236 6 ACGGGTA 400 0.0 38.25 5 GACCGAT 2300 0.0 38.054348 9 AACACGT 1355 0.0 37.85978 41 CGAGGGT 785 0.0 37.834396 4 ACACGAC 1395 0.0 37.741932 26 ACGGGAT 1260 0.0 37.5 5 ACGACCA 1400 0.0 37.44643 28 TAGGGAT 4310 0.0 37.325985 5 CGTAAGG 635 0.0 37.204723 2 ATAGGGA 4680 0.0 36.971153 4 GCGATGT 795 0.0 36.792454 9 GCTACGA 355 0.0 36.760563 10 GGCGATG 3760 0.0 36.50266 8 >>END_MODULE