##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547387_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 3371028 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.23922494859135 31.0 31.0 33.0 30.0 34.0 2 31.64432125749178 31.0 31.0 34.0 30.0 34.0 3 31.72316664234174 31.0 31.0 34.0 30.0 34.0 4 35.53654315538168 37.0 35.0 37.0 33.0 37.0 5 35.44268513936995 37.0 35.0 37.0 33.0 37.0 6 35.474220920146614 37.0 35.0 37.0 33.0 37.0 7 35.85028810202704 37.0 35.0 37.0 35.0 37.0 8 35.83209483872575 37.0 35.0 37.0 35.0 37.0 9 37.561306521334146 39.0 37.0 39.0 35.0 39.0 10 36.88082656091851 39.0 37.0 39.0 32.0 39.0 11 36.563401727900214 39.0 35.0 39.0 32.0 39.0 12 36.18160424653844 38.0 35.0 39.0 31.0 39.0 13 36.039127826882485 38.0 35.0 39.0 31.0 39.0 14 37.09827981256756 39.0 35.0 41.0 31.0 41.0 15 37.234168627492856 39.0 35.0 41.0 31.0 41.0 16 37.324103804536776 39.0 35.0 41.0 32.0 41.0 17 37.24568232598483 39.0 35.0 41.0 32.0 41.0 18 37.07068941581025 39.0 35.0 41.0 31.0 41.0 19 36.977174618543664 39.0 35.0 41.0 31.0 41.0 20 36.79555257328032 38.0 35.0 41.0 31.0 41.0 21 36.649951290822855 38.0 35.0 40.0 31.0 41.0 22 36.54440485216973 38.0 35.0 40.0 30.0 41.0 23 36.43266060086122 38.0 35.0 40.0 30.0 41.0 24 36.294884231160346 38.0 35.0 40.0 30.0 41.0 25 36.172953176301114 38.0 35.0 40.0 30.0 41.0 26 35.93513551355848 38.0 34.0 40.0 30.0 41.0 27 35.91774497275015 38.0 34.0 40.0 30.0 41.0 28 35.94929439921591 38.0 35.0 40.0 30.0 41.0 29 35.942660517800505 38.0 35.0 40.0 30.0 41.0 30 35.917230886245974 38.0 35.0 40.0 29.0 41.0 31 35.843809366163676 38.0 34.0 40.0 29.0 41.0 32 35.64758554363832 38.0 34.0 40.0 28.0 41.0 33 35.40773407993051 38.0 34.0 40.0 27.0 41.0 34 35.12622381065954 38.0 34.0 40.0 25.0 41.0 35 34.949436492369685 38.0 34.0 40.0 24.0 41.0 36 34.68894414404152 38.0 33.0 40.0 24.0 41.0 37 34.65138557140433 38.0 33.0 40.0 23.0 41.0 38 34.556300926601615 37.0 33.0 40.0 23.0 41.0 39 34.377289064344765 37.0 33.0 40.0 23.0 41.0 40 34.22541462129653 37.0 33.0 40.0 23.0 41.0 41 34.16551508916568 37.0 33.0 40.0 23.0 41.0 42 34.06439193029545 37.0 33.0 40.0 23.0 41.0 43 33.93784358955191 36.0 33.0 40.0 22.0 41.0 44 33.81686180002065 36.0 33.0 40.0 22.0 41.0 45 33.662750057252566 36.0 33.0 40.0 22.0 41.0 46 33.56613205229977 36.0 32.0 40.0 22.0 41.0 47 33.52406862239056 35.0 32.0 40.0 22.0 41.0 48 33.39806047294772 35.0 32.0 40.0 21.0 41.0 49 33.24164913492264 35.0 32.0 39.0 20.0 41.0 50 33.111818116016835 35.0 32.0 39.0 20.0 41.0 51 32.63249519137782 35.0 31.0 39.0 20.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 4.0 11 3.0 12 9.0 13 21.0 14 62.0 15 173.0 16 491.0 17 1067.0 18 2388.0 19 4316.0 20 7423.0 21 11520.0 22 16546.0 23 23937.0 24 33101.0 25 47112.0 26 63580.0 27 75679.0 28 81948.0 29 88692.0 30 100787.0 31 118038.0 32 141654.0 33 177189.0 34 260316.0 35 312044.0 36 294336.0 37 364416.0 38 485292.0 39 658694.0 40 190.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.928946303620144 23.030482096262624 27.552722789606023 16.487848810511217 2 33.299634414190564 25.086798448425824 28.080188001998202 13.533379135385406 3 28.12596038953103 25.089112282662736 33.15036244136804 13.634564886438202 4 24.692586356446757 28.247851990550068 32.26846528714683 14.79109636585635 5 22.481984723947708 31.743996193446034 31.3407364163098 14.433282666296455 6 22.280799803502077 40.03585849776389 27.671707265558158 10.011634433175875 7 87.10722663828363 2.966276162642375 8.23567766271891 1.6908195363550822 8 87.14457429603077 2.733528170041898 8.457865078545773 1.664032455381563 9 82.08863883658042 5.110399557642357 10.020652453791543 2.780309151985685 10 43.234615672133245 30.910600564575553 15.530930030839258 10.32385373245194 11 32.58293909157681 24.765531463992584 25.928173838959513 16.72335560547109 12 30.29271782969468 20.84598526028262 29.70693212871563 19.154364781307066 13 25.34642251562431 23.93691182630343 30.478269536770387 20.238396121301868 14 22.087564980178154 24.267256160435334 31.389979555198 22.255199304188515 15 20.68733929234643 23.442759894014525 34.941181147115955 20.92871966652309 16 24.616407813877547 22.658221764992756 32.6841545071711 20.04121591395859 17 25.28786471070546 23.19959964734793 29.418147817223705 22.0943878247229 18 24.866183253298402 23.531427208554778 30.80659668208036 20.79579285606646 19 26.920690068430165 24.959211255438994 27.4604067364614 20.659691939669443 20 28.59730028940727 24.104190175815805 28.472827873277822 18.825681661499104 21 27.468653478998096 24.367967278824146 29.045768827787843 19.11761041438991 22 27.604072110940635 22.426393373178747 28.907977032525388 21.061557483355227 23 25.654399785466037 24.082297744189606 28.90462493933601 21.358677531008347 24 23.99185055715942 23.08978151471895 32.04761277568742 20.87075515243421 25 23.620539491217514 25.05378181373753 29.276855606064384 22.04882308898057 26 23.531278885847286 25.892873034575803 27.9929149209084 22.582933158668514 27 22.389045715431614 25.524914061823278 30.07699728391458 22.00904293883053 28 21.91215854629508 24.987303576238464 31.070106804215214 22.030431073251243 29 22.869047661425533 23.462368155945306 30.890636328146787 22.77794785448237 30 23.05786246806612 24.972026337366522 29.785305847355765 22.184805347211594 31 25.033698919142765 24.21297004949232 28.250581128367962 22.50274990299695 32 26.24410120592294 24.283690316425734 27.570343527256373 21.901864950394952 33 25.469886337342796 25.265052678292793 27.27224454973379 21.992816434630626 34 23.172545585500924 25.36377627240118 29.078993114266627 22.38468502783127 35 23.868535058148435 26.046772675872166 28.362802088858352 21.721890177121043 36 25.335387306186718 26.579903815690642 26.173944565278013 21.910764312844627 37 23.820152190963707 27.482061851755606 26.85661465879251 21.841171298488177 38 23.933530068572555 26.69251041522052 27.325818711680828 22.0481408045261 39 23.55216272306252 27.111818709307666 26.852580281148658 22.483438286481157 40 25.904353212135884 24.987570557111955 27.127629909926586 21.980446320825575 41 22.36780590371839 24.86395841268598 28.652743317468737 24.11549236612689 42 23.273523684763223 24.664553364730285 27.45684699148153 24.605075959024962 43 22.866555839939625 25.417973389719695 27.904188277285147 23.81128249305553 44 23.06216382658346 25.318241201200347 28.267489917022342 23.352105055193846 45 22.168875488426675 26.31464348560736 27.211966201408 24.30451482455797 46 22.415981119112626 27.1137172399636 27.33397646059303 23.136325180330747 47 22.449146076508413 25.559710569001503 28.998246232306585 22.9928971221835 48 23.10683862608083 24.71685195139287 29.682221565647037 22.494087856879265 49 23.24741888824418 25.560422517997477 28.519757177929105 22.672401415829235 50 21.839599077788733 26.203994745816413 29.324823169668125 22.631583006726732 51 21.77445574465712 26.435823137630422 28.37876161218477 23.41095950552769 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1894.0 1 3251.5 2 4609.0 3 31220.5 4 57832.0 5 39277.0 6 20722.0 7 20543.5 8 20365.0 9 20863.5 10 21362.0 11 21362.0 12 21362.0 13 20757.0 14 20152.0 15 19589.0 16 19026.0 17 18003.0 18 16980.0 19 16624.5 20 16269.0 21 16099.5 22 15930.0 23 16793.0 24 17656.0 25 19415.5 26 26928.0 27 32681.0 28 36677.0 29 40673.0 30 47992.0 31 55311.0 32 61790.0 33 68269.0 34 79932.5 35 91596.0 36 95920.5 37 100245.0 38 105598.0 39 110951.0 40 125002.5 41 139054.0 42 153985.0 43 168916.0 44 175397.5 45 181879.0 46 193375.0 47 204871.0 48 205098.5 49 205326.0 50 204394.0 51 203462.0 52 200727.5 53 197993.0 54 196059.0 55 194125.0 56 193265.0 57 192405.0 58 188329.5 59 184254.0 60 177518.0 61 170782.0 62 162153.0 63 153524.0 64 136921.0 65 120318.0 66 106660.5 67 93003.0 68 80562.0 69 68121.0 70 56691.5 71 45262.0 72 38286.0 73 31310.0 74 25268.5 75 15447.0 76 11667.0 77 8634.5 78 5602.0 79 4133.0 80 2664.0 81 1932.0 82 1200.0 83 882.0 84 564.0 85 394.5 86 225.0 87 172.0 88 119.0 89 89.0 90 59.0 91 42.5 92 26.0 93 15.0 94 4.0 95 3.0 96 2.0 97 2.5 98 3.0 99 2.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 3371028.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 23.221742322069943 #Duplication Level Percentage of deduplicated Percentage of total 1 79.22594228203202 18.397644168965336 2 5.384407374815874 2.500706412300546 3 2.072283679955631 1.4436611290248156 4 1.2167145948592606 1.1301693120529392 5 0.8617995006890089 1.000624296914435 6 0.644928877678124 0.8985823328101896 7 0.5195990646427734 0.8446196912946133 8 0.47024032156902 0.8735839661538471 9 0.4439712544757326 0.9278807462857444 >10 7.518743955244392 43.459583749015934 >50 1.5383962853318 23.62198155606575 >100 0.100264951710169 3.1395715897965726 >500 0.0019341835687352266 0.29239738196323495 >1k 6.447278562449222E-4 0.35740452136328904 >5k 0.0 0.0 >10k+ 1.2894557124898447E-4 1.111589145992743 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 37123 1.1012367740641726 No Hit GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT 4182 0.12405711254845703 No Hit GCTCAACTTGACCCTGCATTAGAAATTGAAGACTGTAAATACAAAATAAAA 4083 0.12112032294006457 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.025392847523070115 0.0 2 0.0 0.0 0.0 0.07223315854985482 0.0 3 0.0 0.0 0.0 0.10854255734452517 0.0 4 0.0 0.0 0.0 0.18475076445523442 0.0 5 0.0 0.0 0.0 0.3257166656580723 0.0 6 0.0 0.0 0.0 0.6437798796094247 0.0 7 0.0 0.0 0.0 0.8122744753232545 0.0 8 2.9664541498913684E-5 0.0 0.0 1.1300707084011168 0.0 9 2.9664541498913684E-5 0.0 0.0 1.3126559613269306 0.0 10 2.9664541498913684E-5 0.0 0.0 1.5277832162770526 0.0 11 2.9664541498913684E-5 0.0 0.0 1.7248744299958352 0.0 12 2.9664541498913684E-5 0.0 0.0 1.8708833032534882 0.0 13 2.9664541498913684E-5 0.0 0.0 1.9662548041724957 0.0 14 2.9664541498913684E-5 0.0 0.0 2.0326143835055657 0.0 15 2.9664541498913684E-5 0.0 0.0 2.0880870761085344 0.0 16 2.9664541498913684E-5 0.0 0.0 2.155425585311068 0.0 17 2.9664541498913684E-5 0.0 0.0 2.225938200453986 0.0 18 2.9664541498913684E-5 0.0 0.0 2.3127959779628053 0.0 19 2.9664541498913684E-5 0.0 0.0 2.3831899349397276 0.0 20 2.9664541498913684E-5 0.0 0.0 2.4580929022244846 0.0 21 2.9664541498913684E-5 0.0 0.0 2.5518921824440497 0.0 22 2.9664541498913684E-5 0.0 0.0 2.6575572792631803 0.0 23 2.9664541498913684E-5 0.0 0.0 2.7692442780065902 0.0 24 2.9664541498913684E-5 0.0 0.0 2.8678492139489795 0.0 25 2.9664541498913684E-5 0.0 0.0 2.9623011140815207 0.0 26 2.9664541498913684E-5 0.0 0.0 3.0461034438159516 0.0 27 2.9664541498913684E-5 0.0 0.0 3.135097068312693 0.0 28 2.9664541498913684E-5 0.0 0.0 3.2222514912365012 0.0 29 2.9664541498913684E-5 0.0 0.0 3.324060197660773 0.0 30 2.9664541498913684E-5 0.0 0.0 3.454257870299505 0.0 31 2.9664541498913684E-5 0.0 0.0 3.5665381598728936 0.0 32 2.9664541498913684E-5 0.0 0.0 3.6854633067420384 0.0 33 2.9664541498913684E-5 0.0 0.0 3.7929676051341015 0.0 34 2.9664541498913684E-5 0.0 0.0 3.911091809382776 0.0 35 2.9664541498913684E-5 0.0 0.0 4.034436972935259 0.0 36 2.9664541498913684E-5 0.0 0.0 4.152709499891428 0.0 37 2.9664541498913684E-5 0.0 0.0 4.2751053981159455 0.0 38 2.9664541498913684E-5 0.0 0.0 4.417109558271245 0.0 39 2.9664541498913684E-5 0.0 0.0 4.644814578816907 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTTT 18830 0.0 41.510887 1 TCGTTGA 1045 0.0 37.679424 24 TCGTAAG 120 0.0 37.499996 1 TAACGGG 895 0.0 37.4581 3 GGGCGAT 5455 0.0 37.286892 7 TACGGGA 1145 0.0 37.139736 4 TTAATCG 1095 0.0 36.9863 20 AGGGATT 4110 0.0 36.843067 6 AAGGGAT 4740 0.0 36.69304 5 TCGATAG 135 0.0 36.666664 1 TAATCGT 1105 0.0 36.651585 21 CGTTAGG 610 0.0 36.516396 2 GTTAATC 1265 0.0 36.46245 40 GGATGCC 3215 0.0 36.4619 8 TAGGGAC 3095 0.0 36.42165 5 GCATATC 1320 0.0 36.306816 28 CGTTGAT 1080 0.0 36.25 25 TATGGGA 3270 0.0 36.12385 4 TTAGGGA 4040 0.0 36.089108 4 AGGGCGA 2795 0.0 36.0644 6 >>END_MODULE