SRR1547384_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547384_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1778880
Sequences flagged as poor quality	0
Sequence length	51
%GC	40

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	41277	2.320392606583918	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	1788	0.10051268213707501	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCTGCGA	20	7.0343306E-4	45.0	22
TCGCCGA	35	1.2124292E-7	45.0	28
AACCCGT	20	7.0343306E-4	45.0	31
GCGAACG	70	0.0	45.0	1
CGCGCGT	20	7.0343306E-4	45.0	45
AGACGCG	45	3.8562575E-10	45.0	1
ACGGCGC	25	3.8916703E-5	45.0	41
CGACTAT	20	7.0343306E-4	45.0	37
ATCGCCG	20	7.0343306E-4	45.0	1
CGTTTTT	17220	0.0	43.719513	1
TATTGCG	110	0.0	42.954544	1
CGACGGT	55	6.184564E-11	40.909092	28
CGACCCG	55	6.184564E-11	40.909092	32
TACGGGA	660	0.0	40.90909	4
AGGGCGA	1830	0.0	40.32787	6
GCGATCG	95	0.0	40.263157	9
TGGGCGA	805	0.0	39.40994	6
GCGATAT	160	0.0	39.375	9
TCGTCCC	400	0.0	38.8125	38
GGCACCG	825	0.0	38.727272	8