SRR1547379_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547379_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1861892
Sequences flagged as poor quality	0
Sequence length	51
%GC	37

Per base quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	62302	3.3461661578652255	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	2740	0.1471621340013277	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	2176	0.11687036627258723	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGTTAG	30	2.166229E-6	45.000004	1
CCGGCTA	30	2.166229E-6	45.000004	34
CACGATG	30	2.166229E-6	45.000004	1
CTACGCG	30	2.166229E-6	45.000004	1
TAACGTT	20	7.034416E-4	45.0	22
GCGCATC	20	7.034416E-4	45.0	33
TCTAGCG	50	2.1827873E-11	45.0	1
TGTTCGA	20	7.034416E-4	45.0	20
ACGCTAG	20	7.034416E-4	45.0	1
TCCGTAG	25	3.891741E-5	45.0	1
ACCGTGC	20	7.034416E-4	45.0	31
CGGTCGT	25	3.891741E-5	45.0	36
GTCGGTC	25	3.891741E-5	45.0	34
AGTCGCG	20	7.034416E-4	45.0	1
AGGTCGC	20	7.034416E-4	45.0	42
CGTTTTT	22105	0.0	44.44017	1
TGTTGCG	95	0.0	42.63158	1
CGTTAGG	270	0.0	41.666664	2
ACGGGCC	120	0.0	41.250004	5
TACTCGC	60	3.6379788E-12	41.250004	45