SRR1547377_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547377_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1634031
Sequences flagged as poor quality	0
Sequence length	51
%GC	34

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	93476	5.72057690459973	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCCAAGCTGATCGTATGCCGTCTT	2554	0.1563005842606413	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCCAAGCTGATCGTATGCCGTCT	2524	0.1544646337798977	No Hit
CGTTCTGTCTCTTATACACATCTGACGCCAAGCTGATCGTATGCCGTCTTC	1725	0.10556715264275893	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGACGGT	30	2.1660653E-6	45.000004	28
CGGTCTA	30	2.1660653E-6	45.000004	31
TCGTTAG	50	2.1827873E-11	45.0	1
TACGAAC	20	7.034162E-4	45.0	34
TAGTCCG	20	7.034162E-4	45.0	1
TATCCGT	20	7.034162E-4	45.0	19
CGTTTTT	32575	0.0	44.47506	1
CGTTAGG	215	0.0	43.953487	2
TACGGGT	90	0.0	42.5	4
GTTTTTT	35445	0.0	40.975456	2
GGACCGT	55	6.184564E-11	40.909092	8
TCGTTGA	320	0.0	40.78125	24
AACCGTA	50	1.0822987E-9	40.5	34
GCGTAAG	100	0.0	40.5	1
CTACGGG	280	0.0	40.17857	3
GCGTTCG	45	1.9292202E-8	40.0	44
TCGATCA	45	1.9292202E-8	40.0	17
ACGGGTA	85	0.0	39.705883	5
CGAACGT	40	3.4594086E-7	39.375	29
ATTCGAA	40	3.4594086E-7	39.375	26