##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547377_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1634031 Sequences flagged as poor quality 0 Sequence length 51 %GC 34 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.304120301267233 31.0 31.0 33.0 30.0 34.0 2 31.671118234598975 31.0 31.0 34.0 30.0 34.0 3 31.431371865038056 31.0 31.0 34.0 30.0 34.0 4 35.366573216787195 37.0 35.0 37.0 33.0 37.0 5 35.36192275421947 37.0 35.0 37.0 33.0 37.0 6 35.431431839420426 37.0 35.0 37.0 33.0 37.0 7 35.95711892858826 37.0 35.0 37.0 35.0 37.0 8 35.98808345741298 37.0 35.0 37.0 35.0 37.0 9 37.73143593970983 39.0 38.0 39.0 35.0 39.0 10 37.06783469836252 39.0 37.0 39.0 33.0 39.0 11 36.662317299977786 39.0 35.0 39.0 32.0 39.0 12 36.47244819712723 39.0 35.0 39.0 32.0 39.0 13 36.36409223570422 39.0 35.0 39.0 32.0 39.0 14 37.56000100365293 40.0 36.0 41.0 32.0 41.0 15 37.692544388692745 40.0 36.0 41.0 32.0 41.0 16 37.768089467090896 40.0 36.0 41.0 32.0 41.0 17 37.68940368940369 40.0 36.0 41.0 32.0 41.0 18 37.34959618269176 39.0 36.0 40.0 32.0 41.0 19 37.02002715982744 38.0 36.0 40.0 32.0 41.0 20 36.60914633810497 38.0 35.0 40.0 32.0 41.0 21 36.47696341134287 38.0 35.0 40.0 31.0 41.0 22 36.39081082305048 38.0 35.0 40.0 31.0 41.0 23 36.30547829263949 37.0 35.0 40.0 31.0 41.0 24 36.12497559715819 37.0 35.0 40.0 31.0 41.0 25 35.99145915836358 37.0 35.0 40.0 31.0 41.0 26 35.768735721660114 36.0 35.0 40.0 30.0 41.0 27 35.65555733030769 36.0 35.0 40.0 30.0 41.0 28 35.50676272359582 36.0 34.0 40.0 30.0 41.0 29 35.37920455609471 36.0 34.0 40.0 29.0 41.0 30 35.23857870505517 36.0 34.0 40.0 29.0 41.0 31 35.007310142830825 35.0 34.0 40.0 27.0 41.0 32 34.557918423824276 35.0 33.0 40.0 24.0 41.0 33 33.97446192881286 35.0 33.0 40.0 21.0 41.0 34 33.33756703514193 35.0 33.0 40.0 18.0 41.0 35 32.853797143383446 35.0 32.0 40.0 15.0 41.0 36 32.465336948931814 35.0 31.0 40.0 14.0 41.0 37 32.34570825155704 35.0 31.0 40.0 12.0 41.0 38 32.2453264350554 35.0 31.0 40.0 10.0 41.0 39 32.0755493622826 35.0 31.0 40.0 10.0 41.0 40 31.955866198376896 35.0 31.0 40.0 10.0 41.0 41 31.89264157167153 35.0 31.0 40.0 10.0 41.0 42 31.768367919580474 35.0 30.0 40.0 10.0 41.0 43 31.647193351900913 35.0 30.0 40.0 10.0 41.0 44 31.54144260421008 35.0 30.0 40.0 10.0 41.0 45 31.42232246511847 35.0 30.0 39.0 10.0 41.0 46 31.32636528927542 35.0 29.0 39.0 10.0 41.0 47 31.285309152641535 35.0 29.0 39.0 10.0 41.0 48 31.152259657252525 35.0 29.0 39.0 9.0 41.0 49 31.03910084937189 35.0 28.0 39.0 8.0 41.0 50 30.906447307303228 35.0 28.0 39.0 8.0 41.0 51 30.591421460180378 35.0 27.0 38.0 8.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 0.0 11 0.0 12 1.0 13 10.0 14 33.0 15 83.0 16 252.0 17 663.0 18 1521.0 19 2859.0 20 4763.0 21 7767.0 22 11583.0 23 17038.0 24 25468.0 25 39380.0 26 57070.0 27 61233.0 28 55392.0 29 50368.0 30 50576.0 31 55667.0 32 64933.0 33 79234.0 34 113072.0 35 168387.0 36 165050.0 37 149808.0 38 178840.0 39 272902.0 40 77.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 25.5679359816307 21.43863855704084 24.98802042311315 28.005405038215308 2 42.15795171572632 22.154108459386634 24.461469825235874 11.226469999651169 3 22.653486990148902 21.561586040901304 44.546278497776356 11.238648471173436 4 19.70452212962912 23.939570301909818 44.41011217045454 11.945795398006524 5 18.425048239598883 27.706389903251527 42.69894512405211 11.169616733097474 6 17.91789751846813 34.34800196569098 39.11694453777193 8.61715597806896 7 74.70176514399054 2.3352678131565434 21.749158981683948 1.213808061168974 8 75.27959995862992 1.9346022199089246 21.474623186463415 1.311174634997745 9 71.14981294724518 4.6445263278358855 22.41640458473554 1.7892561401833869 10 34.21556873768001 31.931034356141346 26.42183655022457 7.43156035595408 11 20.972429531630674 23.879718316237575 41.48458627773891 13.663265874392835 12 22.212002097879417 22.681699429202993 40.39696921294639 14.709329259971199 13 17.018465377951824 28.005833426660814 40.76685203646687 14.208849158920486 14 13.838660343653212 30.62420480394803 40.0493013902429 15.487833462155859 15 12.891738284035004 28.04053289074687 45.11438277486779 13.95334605035033 16 15.41647618680429 27.64733349612094 43.84133471152016 13.094855605554606 17 15.280432256181186 28.167091077219464 39.10721400022398 17.445262666375363 18 15.763838017760984 29.245834381355067 40.71813815037781 14.27218945050614 19 17.854312433485045 30.832217993416283 36.78877573314093 14.524693839957747 20 18.99670202095309 30.40229958917548 37.1408498369982 13.460148552873234 21 16.71963383803612 30.837970638255946 38.65434621497389 13.788049308734045 22 17.173541995225307 28.854348540511165 38.21353450454734 15.758574959716187 23 14.626589091639019 31.976504729714428 37.82945366397578 15.567452514670773 24 14.301075071403174 30.52059599848473 42.159481674460274 13.018847255651819 25 14.415332389654786 32.00496196216596 39.38340215087719 14.19630349730207 26 14.411476893645226 34.80056375919428 36.56766609691003 14.220293250250455 27 13.39148400489342 34.18925344745601 37.82902527553027 14.590237272120296 28 12.985738948649079 32.685242813630836 40.28375226663387 14.045265971086227 29 13.091612093038627 30.551562363259936 40.253397885352236 16.103427658349197 30 14.331674246082235 33.54618119240088 38.123144542545404 13.999000018971488 31 16.92972777138255 33.30610006786897 35.7486485874503 14.01552357329818 32 17.156284060706316 33.16203915347995 35.50520155370369 14.17647523211004 33 16.720551813276494 34.27511473160546 34.32884688234189 14.675486572776158 34 14.452296192667092 34.00406724229834 34.67467875456463 16.868957810469936 35 15.378472011852896 34.22077059737545 34.320034320034324 16.080723070737335 36 17.798744332267873 34.89248367993019 31.62632777468726 15.682444213114685 37 15.098489563539491 36.91374276253021 33.27121700873484 14.716550665195458 38 15.713900164684757 36.74636527703575 31.872651130853697 15.667083427425796 39 15.473268255008627 37.37836063085707 31.25283424855465 15.895536865579663 40 18.06128525101421 35.331643034924056 30.834176340595743 15.772895373465987 41 15.370638623135058 34.54432627043184 31.849273361398893 18.235761745034214 42 15.949269016316093 35.45220378315956 30.11111784292954 18.487409357594807 43 16.257280308635515 35.86388507929164 30.708291335966088 17.170543276106756 44 15.864142112358945 36.88516313337997 30.362704257140777 16.887990497120313 45 15.347934035523195 37.81384808488946 29.364130790664316 17.47408708892304 46 16.429676058777343 37.190726491725066 29.259542811611283 17.120054637886305 47 15.718796032633408 35.91963677555689 30.533508850199294 17.828058341610408 48 16.34736427889067 35.01867467630663 31.615740460248304 17.018220584554395 49 16.264746507257204 34.79793223017189 31.432329007222016 17.50499225534889 50 15.427308294640676 36.290376375968386 31.473576694689392 16.808738634701545 51 14.683503556542075 36.63100638849569 30.507621948420805 18.177868106541432 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1070.0 1 1628.0 2 2186.0 3 57208.5 4 112231.0 5 69255.0 6 26279.0 7 27840.5 8 29402.0 9 34479.0 10 39556.0 11 45309.0 12 51062.0 13 53339.0 14 55616.0 15 53108.5 16 50601.0 17 45768.5 18 40936.0 19 37338.0 20 33740.0 21 30930.0 22 28120.0 23 26175.5 24 24231.0 25 23965.5 26 24936.0 27 26172.0 28 28106.5 29 30041.0 30 32464.0 31 34887.0 32 38417.5 33 41948.0 34 46252.0 35 50556.0 36 52106.0 37 53656.0 38 59726.0 39 65796.0 40 72693.5 41 79591.0 42 86850.0 43 94109.0 44 98408.0 45 102707.0 46 105251.0 47 107795.0 48 103839.5 49 99884.0 50 92624.5 51 85365.0 52 75345.0 53 65325.0 54 58655.0 55 51985.0 56 46359.5 57 40734.0 58 35186.0 59 29638.0 60 25624.5 61 21611.0 62 17789.5 63 13968.0 64 11351.0 65 8734.0 66 6473.5 67 4213.0 68 3416.5 69 2620.0 70 2126.0 71 1632.0 72 1291.0 73 950.0 74 783.0 75 497.5 76 379.0 77 268.5 78 158.0 79 125.0 80 92.0 81 74.0 82 56.0 83 47.0 84 38.0 85 31.0 86 24.0 87 15.0 88 6.0 89 6.0 90 6.0 91 6.0 92 6.0 93 4.0 94 2.0 95 1.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1634031.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 35.683539772529535 #Duplication Level Percentage of deduplicated Percentage of total 1 74.60530055797389 26.62181209701981 2 8.94904125920746 6.386669393978744 3 4.425899774193807 4.737953118650226 4 2.5351515069987136 3.618527185175071 5 1.681530766714206 3.000148499638923 6 1.1221276977541104 2.4024892999599476 7 0.815728800618545 2.037566377032877 8 0.6274633877072795 1.791209180084706 9 0.5061743468263965 1.6255883193132488 >10 4.436951182151111 33.25729104751788 >50 0.26425574415646247 5.924199064733934 >100 0.027250708181412966 1.6554331006288614 >500 0.002082845011130715 0.5789164369016987 >1k 8.678520879711314E-4 0.572660893933145 >5k 0.0 0.0 >10k+ 1.7357041759422627E-4 5.789535985430961 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 93476 5.72057690459973 No Hit CGTTTCTGTCTCTTATACACATCTGACGCCAAGCTGATCGTATGCCGTCTT 2554 0.1563005842606413 No Hit CGTTTTCTGTCTCTTATACACATCTGACGCCAAGCTGATCGTATGCCGTCT 2524 0.1544646337798977 No Hit CGTTCTGTCTCTTATACACATCTGACGCCAAGCTGATCGTATGCCGTCTTC 1725 0.10556715264275893 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 6.119834935812112E-5 0.0 0.0 0.05501731607295088 0.0 2 6.119834935812112E-5 0.0 0.0 0.15201669980557284 0.0 3 6.119834935812112E-5 0.0 0.0 0.25024005052535725 0.0 4 6.119834935812112E-5 0.0 0.0 0.3680468730397404 0.0 5 6.119834935812112E-5 0.0 0.0 0.6690815535323381 0.0 6 6.119834935812112E-5 0.0 0.0 1.274333228684156 0.0 7 6.119834935812112E-5 0.0 0.0 1.7532715107608117 0.0 8 6.119834935812112E-5 0.0 0.0 2.3287195897752246 0.0 9 6.119834935812112E-5 0.0 0.0 2.660353444946883 0.0 10 6.119834935812112E-5 0.0 0.0 2.9526979598306275 0.0 11 6.119834935812112E-5 0.0 0.0 3.2340267718299103 0.0 12 6.119834935812112E-5 0.0 0.0 3.4261283904650526 0.0 13 6.119834935812112E-5 0.0 0.0 3.5637634781714667 0.0 14 6.119834935812112E-5 0.0 0.0 3.6539698451253373 0.0 15 6.119834935812112E-5 0.0 0.0 3.7241643518391023 0.0 16 6.119834935812112E-5 0.0 0.0 3.8233668761486164 0.0 17 6.119834935812112E-5 0.0 0.0 3.9384809712912423 0.0 18 6.119834935812112E-5 0.0 0.0 4.074402505215629 0.0 19 6.119834935812112E-5 0.0 0.0 4.167546392938689 0.0 20 6.119834935812112E-5 0.0 0.0 4.258364743386141 0.0 21 6.119834935812112E-5 0.0 0.0 4.372989251733903 0.0 22 6.119834935812112E-5 0.0 0.0 4.497772686075111 0.0 23 6.119834935812112E-5 0.0 0.0 4.637060129214195 0.0 24 6.119834935812112E-5 0.0 0.0 4.756947695606754 0.0 25 6.119834935812112E-5 0.0 0.0 4.862637244948229 0.0 26 6.119834935812112E-5 0.0 0.0 4.965389273520515 0.0 27 6.119834935812112E-5 0.0 0.0 5.074138740329896 0.0 28 6.119834935812112E-5 0.0 0.0 5.184601760921304 0.0 29 6.119834935812112E-5 0.0 0.0 5.304122137217715 0.0 30 6.119834935812112E-5 0.0 0.0 5.462564663705891 0.0 31 6.119834935812112E-5 0.0 0.0 5.593467932982912 0.0 32 6.119834935812112E-5 0.0 0.0 5.726451946138109 0.0 33 6.119834935812112E-5 0.0 0.0 5.859680752690738 0.0 34 6.119834935812112E-5 0.0 0.0 6.005088030765634 0.0 35 6.119834935812112E-5 0.0 0.0 6.164264937446108 0.0 36 6.119834935812112E-5 0.0 0.0 6.317322009190768 0.0 37 6.119834935812112E-5 0.0 0.0 6.470440279284787 0.0 38 6.119834935812112E-5 0.0 0.0 6.6258228883050565 0.0 39 6.119834935812112E-5 0.0 0.0 6.821780002949761 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGACGGT 30 2.1660653E-6 45.000004 28 CGGTCTA 30 2.1660653E-6 45.000004 31 TCGTTAG 50 2.1827873E-11 45.0 1 TACGAAC 20 7.034162E-4 45.0 34 TAGTCCG 20 7.034162E-4 45.0 1 TATCCGT 20 7.034162E-4 45.0 19 CGTTTTT 32575 0.0 44.47506 1 CGTTAGG 215 0.0 43.953487 2 TACGGGT 90 0.0 42.5 4 GTTTTTT 35445 0.0 40.975456 2 GGACCGT 55 6.184564E-11 40.909092 8 TCGTTGA 320 0.0 40.78125 24 AACCGTA 50 1.0822987E-9 40.5 34 GCGTAAG 100 0.0 40.5 1 CTACGGG 280 0.0 40.17857 3 GCGTTCG 45 1.9292202E-8 40.0 44 TCGATCA 45 1.9292202E-8 40.0 17 ACGGGTA 85 0.0 39.705883 5 CGAACGT 40 3.4594086E-7 39.375 29 ATTCGAA 40 3.4594086E-7 39.375 26 >>END_MODULE