SRR1547375_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547375_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1311318
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	19342	1.475004537419604	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	3216	0.24524943606356353	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	1316	0.10035704535436867	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTTTGG	135	0.0	45.000004	2
GGTCGTA	35	1.2121018E-7	45.0	8
GATCGGT	20	7.0336513E-4	45.0	9
GATCGAC	20	7.0336513E-4	45.0	40
GCGAATC	25	3.891108E-5	45.0	44
TTAGCGA	40	6.8157533E-9	45.0	27
CGTCTTA	20	7.0336513E-4	45.0	38
ATTAACG	45	3.8562575E-10	45.0	1
TACGGGA	285	0.0	45.0	4
TACGCCT	20	7.0336513E-4	45.0	30
GTCGTGA	25	3.891108E-5	45.0	10
GTCGTAC	25	3.891108E-5	45.0	20
CGTACTT	20	7.0336513E-4	45.0	40
TCGTATC	20	7.0336513E-4	45.0	31
GCGATAC	50	2.1827873E-11	45.0	9
ACTCGAT	25	3.891108E-5	45.0	45
TCTCCGT	20	7.0336513E-4	45.0	14
ATGCGTC	25	3.891108E-5	45.0	14
TTACGTA	25	3.891108E-5	45.0	20
CGTAAGT	40	6.8157533E-9	45.0	31