##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547370_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2475621 Sequences flagged as poor quality 0 Sequence length 51 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.255287461206702 31.0 31.0 33.0 30.0 34.0 2 31.660132144621493 31.0 31.0 34.0 30.0 34.0 3 31.74190152693001 31.0 31.0 34.0 30.0 34.0 4 35.531148750151985 37.0 35.0 37.0 33.0 37.0 5 35.429186858570034 37.0 35.0 37.0 33.0 37.0 6 35.46562054530964 37.0 35.0 37.0 33.0 37.0 7 35.89906936481796 37.0 35.0 37.0 35.0 37.0 8 35.90346664533868 37.0 35.0 37.0 35.0 37.0 9 37.64475660854388 39.0 37.0 39.0 35.0 39.0 10 36.869494159243274 39.0 37.0 39.0 32.0 39.0 11 36.602036822276105 39.0 35.0 39.0 32.0 39.0 12 36.250371522943134 38.0 35.0 39.0 32.0 39.0 13 36.09174142568673 38.0 35.0 39.0 31.0 39.0 14 37.14621906988186 39.0 35.0 41.0 31.0 41.0 15 37.28465908149915 39.0 35.0 41.0 32.0 41.0 16 37.36580357009413 39.0 35.0 41.0 32.0 41.0 17 37.27955975490594 39.0 35.0 41.0 32.0 41.0 18 37.155472505686454 39.0 35.0 41.0 32.0 41.0 19 37.092049227244395 39.0 35.0 41.0 32.0 41.0 20 36.93329027343039 39.0 35.0 41.0 31.0 41.0 21 36.81498379598493 38.0 35.0 41.0 31.0 41.0 22 36.731912114172566 38.0 35.0 40.0 31.0 41.0 23 36.63613614523386 38.0 35.0 40.0 31.0 41.0 24 36.51448828394977 38.0 35.0 40.0 31.0 41.0 25 36.41681582116164 38.0 35.0 40.0 30.0 41.0 26 36.18838909509977 38.0 35.0 40.0 30.0 41.0 27 36.18615975547146 38.0 35.0 40.0 30.0 41.0 28 36.237041938164204 38.0 35.0 40.0 30.0 41.0 29 36.25770099704276 38.0 35.0 40.0 30.0 41.0 30 36.23081077434713 38.0 35.0 40.0 30.0 41.0 31 36.14108944785975 38.0 35.0 40.0 30.0 41.0 32 35.96201397548332 38.0 35.0 40.0 29.0 41.0 33 35.78227361942721 38.0 35.0 40.0 29.0 41.0 34 35.561753596370366 38.0 34.0 40.0 27.0 41.0 35 35.41724884382545 38.0 34.0 40.0 26.0 41.0 36 35.17399795849203 38.0 34.0 40.0 25.0 41.0 37 35.13800416138012 38.0 34.0 40.0 25.0 41.0 38 35.05936167127359 38.0 34.0 40.0 25.0 41.0 39 34.92258508067269 38.0 34.0 40.0 24.0 41.0 40 34.81654380860398 38.0 34.0 40.0 24.0 41.0 41 34.778248366773425 38.0 34.0 40.0 24.0 41.0 42 34.69215764448597 38.0 33.0 40.0 23.0 41.0 43 34.59535041914736 38.0 33.0 40.0 23.0 41.0 44 34.51595417876969 37.0 33.0 40.0 23.0 41.0 45 34.37010915645004 37.0 33.0 40.0 23.0 41.0 46 34.282282304116826 37.0 33.0 40.0 23.0 41.0 47 34.24663508671158 37.0 33.0 40.0 23.0 41.0 48 34.12510154017921 37.0 33.0 40.0 23.0 41.0 49 33.998541780022066 37.0 33.0 40.0 23.0 41.0 50 33.88435669272477 36.0 33.0 40.0 22.0 41.0 51 33.41708605638747 36.0 32.0 40.0 21.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 3.0 11 3.0 12 11.0 13 10.0 14 31.0 15 83.0 16 260.0 17 567.0 18 1400.0 19 2513.0 20 4282.0 21 6853.0 22 10363.0 23 15109.0 24 21532.0 25 31218.0 26 42062.0 27 49642.0 28 54083.0 29 59719.0 30 68274.0 31 82145.0 32 98549.0 33 123031.0 34 182839.0 35 235772.0 36 199523.0 37 249415.0 38 362922.0 39 573223.0 40 184.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.42165137555385 24.123765309794997 28.881763404010552 15.572819910640604 2 31.430538034699175 25.72530286340276 29.25629569308065 13.587863408817425 3 27.597116036743913 25.225024347426363 33.73577781090078 13.442081804928947 4 24.158665643892988 28.562247613831033 32.88827328577355 14.39081345650243 5 22.199722817022476 32.24960525056137 31.593648623921027 13.95702330849512 6 21.217181466791565 40.468593536732804 28.096950219763038 10.217274776712589 7 89.0388310650136 2.7274368734147916 7.129483874955012 1.1042481866166105 8 90.05594959810084 2.0119396305007915 6.763717063314618 1.1683937080837494 9 85.33422523076028 4.757028640490608 8.06399687189598 1.8447492568531292 10 37.08083749491542 35.652912945883074 15.374849381225964 11.891400177975546 11 29.96565306240333 25.553547978466817 27.92563966778437 16.555159291345483 12 28.40386311151828 23.600381480040767 29.505889633348563 18.48986577509239 13 23.37284261201533 28.482510044954378 30.16148271484205 17.98316462818824 14 20.32245646647851 30.542195271408666 30.779792221830398 18.355556040282416 15 19.542086611803665 26.628672159429893 36.516453851377086 17.31278737738935 16 22.69737572916048 24.691703616991454 34.795996640842844 17.81492401300522 17 21.860454407197224 24.888825874396765 30.38538613139895 22.865333587007058 18 22.762409916542154 24.94533694777997 32.61420063895079 19.678052496727084 19 25.140762661166633 26.807940310734157 28.666140738020886 19.385156290078328 20 26.530393788063684 26.915226522961312 28.50238384631573 18.051995842659277 21 24.11673677028915 26.910662011673033 30.648875575057733 18.323725642980087 22 23.86617337629629 24.75314274680979 29.87795789420109 21.502725982692827 23 21.718994951165786 27.855677423967563 29.759078631179815 20.666248993686835 24 20.860907222874584 27.111338932736473 33.52710289660655 18.500650947782397 25 21.481680758080497 27.630117857297222 31.229053235531612 19.659148149090672 26 20.374524210289056 30.426507126898667 28.725358203052892 20.47361045975939 27 19.778188987732776 29.226848536185468 30.911233989370746 20.08372848671101 28 18.595334261585275 29.03804742325259 32.97100000363545 19.395618311526682 29 19.556466842057002 26.544006534118108 32.91848792686764 20.98103869695725 30 20.746471289425966 27.836732682425946 31.896239367819224 19.520556660328864 31 23.614438559052456 27.658918711709102 29.648399330915353 19.07824339832309 32 24.16722915179666 27.36141759986686 29.025242555302285 19.446110693034193 33 23.16291548665971 27.658959105614304 28.931367119603525 20.246758288122454 34 20.4077683942736 28.692679533741234 29.88494603980173 21.01460603218344 35 20.42699589315166 28.05243613622602 30.278705827749885 21.241862142872435 36 23.80408794399466 28.893316060899465 27.807204737720355 19.49539125738552 37 21.153641853902517 30.353596128001826 28.012324988356458 20.480437029739203 38 21.34559369144146 30.3144544338572 27.873450742258203 20.46650113244313 39 20.937978794007645 29.491267039663988 28.322994513295857 21.24775965303251 40 23.107131503570216 27.76434680429678 27.743947882167745 21.384573809965257 41 20.064581775643365 27.43517687077303 28.865080721160467 23.635160632423137 42 21.44657845445648 27.928628816769614 27.793753567286757 22.83103916148716 43 21.12750699723423 28.062292249096288 28.41299213409484 22.397208619574645 44 21.043810825647384 29.0186179548485 28.631038434396867 21.30653278510725 45 20.458462745307138 29.84657182985602 27.394863753377436 22.300101671459405 46 21.749775106932763 29.809369043161293 27.45440436965109 20.986451480254853 47 21.111107071720593 28.83110944688222 28.54742305062043 21.51036043077676 48 21.659615910512958 27.59085498143698 29.789172090558285 20.960357017491773 49 21.45162769260723 27.492374640544735 29.43289784664131 21.62309982020673 50 20.54676382208747 29.482420774423872 28.85756745479215 21.113247948696507 51 20.070519679708646 29.711211853510694 28.00715456849009 22.21111389829057 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1262.0 1 1781.0 2 2300.0 3 17483.5 4 32667.0 5 22611.5 6 12556.0 7 12706.0 8 12856.0 9 13679.0 10 14502.0 11 15445.0 12 16388.0 13 16044.0 14 15700.0 15 15192.5 16 14685.0 17 14000.5 18 13316.0 19 13322.0 20 13328.0 21 14750.0 22 16172.0 23 15944.0 24 15716.0 25 18209.5 26 23474.5 27 26246.0 28 30862.0 29 35478.0 30 41638.0 31 47798.0 32 56399.5 33 65001.0 34 72618.0 35 80235.0 36 89985.0 37 99735.0 38 109046.0 39 118357.0 40 132352.0 41 146347.0 42 161883.5 43 177420.0 44 184772.0 45 192124.0 46 195918.0 47 199712.0 48 197831.5 49 195951.0 50 188931.0 51 181911.0 52 169131.5 53 156352.0 54 145140.0 55 133928.0 56 121837.0 57 109746.0 58 99456.0 59 89166.0 60 78935.5 61 68705.0 62 60314.5 63 51924.0 64 43194.5 65 34465.0 66 28166.5 67 21868.0 68 17930.0 69 13992.0 70 11972.0 71 9952.0 72 8296.0 73 6640.0 74 5831.5 75 3965.5 76 2908.0 77 2101.0 78 1294.0 79 989.0 80 684.0 81 483.5 82 283.0 83 204.5 84 126.0 85 85.0 86 44.0 87 35.0 88 26.0 89 23.0 90 20.0 91 13.5 92 7.0 93 4.0 94 1.0 95 0.5 96 0.0 97 0.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2475621.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 22.615796761332803 #Duplication Level Percentage of deduplicated Percentage of total 1 79.41522132840511 17.960385053194724 2 6.304324908798099 2.8515466170957158 3 2.2938568155298 1.556321986188601 4 1.2743174537554471 1.1527881817420922 5 0.8954109579127706 1.012521612101277 6 0.6439597768666498 0.8738198061653626 7 0.517919482966997 0.8199213235861319 8 0.42660130041759114 0.7718342646691616 9 0.36735875377730054 0.7477299822531538 >10 5.737607997641663 31.858188235314135 >50 1.6762121412470472 26.539957398467408 >100 0.445585512965667 12.719328615667777 >500 0.0010823798104849698 0.1524218374191542 >1k 3.607932701616566E-4 0.13430746487790565 >5k 0.0 0.0 >10k+ 1.803966350808283E-4 0.8489276212574304 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 20808 0.8405163795265915 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 4.03939052060069E-5 0.0 0.0 0.02787179459214476 0.0 2 4.03939052060069E-5 0.0 0.0 0.0896340756521293 0.0 3 4.03939052060069E-5 0.0 0.0 0.13148216144555244 0.0 4 4.03939052060069E-5 0.0 0.0 0.21804630030202524 0.0 5 4.03939052060069E-5 0.0 0.0 0.37166432180046943 0.0 6 4.03939052060069E-5 0.0 0.0 0.6742954596038732 0.0 7 4.03939052060069E-5 0.0 0.0 0.8252878772639269 0.0 8 8.07878104120138E-5 0.0 0.0 1.1387849755677464 0.0 9 8.07878104120138E-5 0.0 0.0 1.2761242532681698 0.0 10 8.07878104120138E-5 0.0 0.0 1.4771243255732602 0.0 11 8.07878104120138E-5 0.0 0.0 1.6951706258752854 0.0 12 8.07878104120138E-5 0.0 0.0 1.8632496654374802 0.0 13 8.07878104120138E-5 0.0 0.0 1.9644363979785273 0.0 14 8.07878104120138E-5 0.0 0.0 2.0179179284712805 0.0 15 8.07878104120138E-5 0.0 0.0 2.072611276120214 0.0 16 8.07878104120138E-5 0.0 0.0 2.1673349838283 0.0 17 8.07878104120138E-5 0.0 0.0 2.2824576136654198 0.0 18 8.07878104120138E-5 0.0 0.0 2.419716103555431 0.0 19 8.07878104120138E-5 0.0 0.0 2.5155708406092856 0.0 20 8.07878104120138E-5 0.0 0.0 2.6103349422225777 0.0 21 8.07878104120138E-5 0.0 0.0 2.7298605077271523 0.0 22 1.211817156180207E-4 0.0 0.0 2.8634835461486228 0.0 23 1.211817156180207E-4 0.0 0.0 3.016697628595007 0.0 24 1.211817156180207E-4 0.0 0.0 3.1382024954546757 0.0 25 1.211817156180207E-4 0.0 0.0 3.2494473103920187 0.0 26 1.211817156180207E-4 0.0 0.0 3.355198554221345 0.0 27 1.211817156180207E-4 0.0 0.0 3.4677763680304863 0.0 28 1.211817156180207E-4 0.0 0.0 3.5810812721333356 0.0 29 1.211817156180207E-4 0.0 0.0 3.712482645768476 0.0 30 1.211817156180207E-4 0.0 0.0 3.8700592699771086 0.0 31 1.211817156180207E-4 0.0 0.0 4.010589666188807 0.0 32 1.211817156180207E-4 0.0 0.0 4.163763354729985 0.0 33 1.211817156180207E-4 0.0 0.0 4.307444475547752 0.0 34 1.211817156180207E-4 0.0 0.0 4.449227082820836 0.0 35 1.211817156180207E-4 0.0 0.0 4.60405692147546 0.0 36 1.211817156180207E-4 0.0 0.0 4.752181371865888 0.0 37 1.211817156180207E-4 0.0 0.0 4.905557029933096 0.0 38 1.211817156180207E-4 0.0 0.0 5.08324981893432 0.0 39 1.211817156180207E-4 0.0 0.0 5.338822057172726 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TATCGAC 30 2.1665219E-6 44.999996 18 CGTTTTT 12525 0.0 42.646706 1 GCGATAC 120 0.0 41.249996 9 TAACGGG 780 0.0 39.807693 3 AGGGCGA 2305 0.0 39.338394 6 GGGCGAT 4940 0.0 38.98785 7 ACGGGAT 1480 0.0 38.76689 5 ATTACGG 180 0.0 38.75 2 TGGGCGA 1710 0.0 38.68421 6 CACGACC 895 0.0 38.463688 27 GACCGAT 1595 0.0 38.369904 9 TAGGGAC 2470 0.0 38.168015 5 AACACGT 855 0.0 38.157894 41 GGCGATT 1235 0.0 37.712547 8 GACGGGA 1430 0.0 37.604897 4 CGTACCG 30 1.1403026E-4 37.499996 20 TTACGGG 835 0.0 37.45509 3 ACGGGTA 235 0.0 37.340427 5 CGTAAGG 400 0.0 37.125 2 CGAGACA 935 0.0 37.058823 22 >>END_MODULE