##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547367_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1066934 Sequences flagged as poor quality 0 Sequence length 51 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.406579038628443 31.0 31.0 33.0 30.0 34.0 2 31.828285535937557 31.0 31.0 34.0 30.0 34.0 3 31.950065327377327 31.0 31.0 34.0 30.0 34.0 4 35.7106746996534 37.0 35.0 37.0 33.0 37.0 5 35.592636470484585 37.0 35.0 37.0 33.0 37.0 6 35.632434621073095 37.0 35.0 37.0 33.0 37.0 7 35.98613128834586 37.0 35.0 37.0 35.0 37.0 8 35.9697272746018 37.0 35.0 37.0 35.0 37.0 9 37.68846526589274 39.0 37.0 39.0 35.0 39.0 10 37.07359780455023 39.0 37.0 39.0 33.0 39.0 11 36.81356953663488 39.0 37.0 39.0 32.0 39.0 12 36.49336978669721 39.0 35.0 39.0 32.0 39.0 13 36.36899751999655 39.0 35.0 39.0 32.0 39.0 14 37.47545490161528 39.0 36.0 41.0 32.0 41.0 15 37.60266989335798 40.0 36.0 41.0 32.0 41.0 16 37.66076064686288 40.0 36.0 41.0 32.0 41.0 17 37.54761306697509 39.0 36.0 41.0 32.0 41.0 18 37.43547117253738 39.0 36.0 41.0 32.0 41.0 19 37.40188802681328 39.0 36.0 41.0 32.0 41.0 20 37.2735323834464 39.0 35.0 41.0 32.0 41.0 21 37.172086558306326 39.0 35.0 41.0 32.0 41.0 22 37.08356843066206 39.0 35.0 41.0 31.0 41.0 23 37.0007713691756 39.0 35.0 41.0 31.0 41.0 24 36.884117480556434 39.0 35.0 41.0 31.0 41.0 25 36.789768626737924 38.0 35.0 40.0 31.0 41.0 26 36.69251425111582 38.0 35.0 41.0 31.0 41.0 27 36.624055471097556 38.0 35.0 40.0 31.0 41.0 28 36.70457122933565 39.0 35.0 41.0 31.0 41.0 29 36.71538726856581 39.0 35.0 41.0 31.0 41.0 30 36.67184474391106 39.0 35.0 41.0 31.0 41.0 31 36.596816672821376 39.0 35.0 41.0 30.0 41.0 32 36.49120564158608 39.0 35.0 41.0 30.0 41.0 33 36.329783285564055 39.0 35.0 41.0 30.0 41.0 34 36.156635743166866 38.0 35.0 41.0 30.0 41.0 35 36.01932921811471 38.0 35.0 41.0 29.0 41.0 36 35.90227792909402 38.0 35.0 40.0 29.0 41.0 37 35.82451585571366 38.0 35.0 40.0 28.0 41.0 38 35.73149885559931 38.0 35.0 40.0 28.0 41.0 39 35.694211638208174 38.0 35.0 40.0 28.0 41.0 40 35.554351065764145 38.0 34.0 40.0 27.0 41.0 41 35.47143872067063 38.0 34.0 40.0 27.0 41.0 42 35.402446636811646 38.0 34.0 40.0 27.0 41.0 43 35.36550152118125 38.0 34.0 40.0 27.0 41.0 44 35.23380077867984 38.0 34.0 40.0 26.0 41.0 45 35.139516596153086 38.0 34.0 40.0 26.0 41.0 46 35.08392552866438 38.0 34.0 40.0 26.0 41.0 47 34.94329358704475 38.0 34.0 40.0 26.0 41.0 48 34.88919652012214 37.0 34.0 40.0 25.0 41.0 49 34.78328556405551 37.0 34.0 40.0 25.0 41.0 50 34.718830780535626 37.0 34.0 40.0 25.0 41.0 51 34.2620068345371 37.0 33.0 40.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 0.0 10 2.0 11 3.0 12 8.0 13 4.0 14 19.0 15 39.0 16 85.0 17 193.0 18 390.0 19 735.0 20 1347.0 21 2098.0 22 3229.0 23 4797.0 24 6903.0 25 9989.0 26 13772.0 27 16786.0 28 18925.0 29 21435.0 30 25921.0 31 31333.0 32 39141.0 33 49863.0 34 75719.0 35 98596.0 36 88140.0 37 111462.0 38 167196.0 39 278736.0 40 67.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.204085726014917 23.99529867826876 29.627324651759153 15.173290943957172 2 32.012383146473915 24.90735134506914 30.032972986145346 13.047292522311595 3 28.819964496398093 25.657163423417007 32.07517990803555 13.447692172149356 4 26.13460626430501 27.584555370810193 31.91265814005365 14.36818022483115 5 23.235645316392578 32.026629575962524 30.370763327441058 14.366961780203836 6 22.26632575210838 40.7826538473795 26.757512648392495 10.193507752119626 7 89.29296470072188 3.026991360290327 6.28932998667209 1.3907139523157008 8 89.69767577001015 2.7435623946748344 6.1868869114678136 1.3718749238472108 9 84.46858006212193 5.9867808130587274 7.255556576133107 2.2890825486862356 10 35.86379288690772 41.57576757325195 13.102497436579958 9.45794210326037 11 31.221331403816922 23.70793319924194 27.524476678032567 17.54625871890857 12 29.760322569156106 22.393793805427514 29.854142805459382 17.991740819957 13 26.037505600158962 25.62510895706763 29.44783838550463 18.88954705726877 14 20.297694140406062 29.898287991572115 29.746919678255633 20.05709818976619 15 19.324063156671357 28.34402127966678 34.52059827505731 17.811317288604545 16 24.553533770598744 26.62854497091666 31.90272313001554 16.915198128469054 17 23.390481510571412 26.36470484584801 28.70233772660727 21.54247591697331 18 23.666318628893634 27.347146121503297 30.36860761771581 18.61792763188726 19 25.416005113718377 28.20315033544718 27.52785083238513 18.852993718449312 20 26.809062228778913 27.685592548367566 27.84014756301702 17.665197659836505 21 26.287661654797766 26.08989871913352 30.164939911934574 17.457499714134144 22 25.20109022676192 23.230958990902906 30.616889142158747 20.95106164017643 23 22.27926001045988 27.03691137408687 30.40103699010436 20.2827916253489 24 21.954966286574425 26.805125715367584 32.18343402684702 19.056473971210966 25 22.192094356351937 28.177094365724592 29.762478278881353 19.868332999042117 26 21.034009601343666 31.05299859222782 27.268228400257183 20.64476340617133 27 20.19731304841724 29.91600230192308 30.542376566872925 19.34430808278675 28 18.92788119977431 28.82108921451561 32.47061205285425 19.78041753285583 29 20.35224296910587 27.878200525993176 31.710021425880136 20.059535079020822 30 21.25942185739699 27.700213883895348 31.832053341631255 19.208310917076407 31 24.494954701977818 27.046565204595595 28.169971150980285 20.2885089424463 32 23.640731291720012 28.374763574879047 28.74948216103339 19.23502297236755 33 22.83871354741718 27.669471588683088 28.70533697492066 20.786477888979075 34 21.164008270427225 28.370170975899168 29.7978131730735 20.66800758060011 35 21.354554264837375 27.392416025733553 29.680186403282676 21.572843306146396 36 23.913944067768014 28.64638300026056 27.920096275870858 19.519576656100565 37 22.315719622769542 29.80006260930854 28.058061698286867 19.826156069635047 38 21.57827944371442 30.750918051163428 26.662005334912937 21.008797170209217 39 21.55016149077637 28.52772523886201 28.183655221410138 21.738458048951482 40 22.646199296301365 27.6937467547196 28.289753630496357 21.37030031848268 41 20.521981678341866 27.10505054670673 29.316621271793757 23.056346503157645 42 21.185565367679725 28.39772656977845 27.8418346401933 22.574873422348524 43 21.35361699973944 27.68006268428975 28.238391503129527 22.72792881284128 44 21.032041344638 28.23604834038469 29.13713500553924 21.59477530943807 45 21.116301476942343 29.358798201200827 27.593084483201398 21.931815838655435 46 21.890951080385477 29.110797856287267 27.887948083011693 21.11030298031556 47 21.40197987879288 28.053187919777606 29.435091580172717 21.109740621256798 48 21.132891069175788 28.20774293442706 30.01582103485314 20.643544961544013 49 21.699467820877395 27.821214808038736 29.467427226051473 21.011890145032403 50 20.327311717500802 28.727362704722132 29.576712336470674 21.3686132413064 51 19.942658121308344 29.034035844766404 29.24201496999814 21.781291063927103 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1115.0 1 1595.0 2 2075.0 3 7412.5 4 12750.0 5 8728.5 6 4707.0 7 4772.0 8 4837.0 9 5189.5 10 5542.0 11 5758.5 12 5975.0 13 5922.5 14 5870.0 15 5502.0 16 5134.0 17 4917.0 18 4700.0 19 4790.5 20 4881.0 21 5514.0 22 6147.0 23 6371.0 24 6595.0 25 7720.5 26 11373.0 27 13900.0 28 15590.5 29 17281.0 30 19767.0 31 22253.0 32 24355.5 33 26458.0 34 32399.5 35 38341.0 36 40759.0 37 43177.0 38 46492.5 39 49808.0 40 56056.5 41 62305.0 42 70484.5 43 78664.0 44 77490.0 45 76316.0 46 78849.0 47 81382.0 48 80386.5 49 79391.0 50 76730.5 51 74070.0 52 68786.5 53 63503.0 54 59889.5 55 56276.0 56 52569.0 57 48862.0 58 46135.0 59 43408.0 60 39905.5 61 36403.0 62 31159.0 63 25915.0 64 22481.0 65 19047.0 66 15667.0 67 12287.0 68 10018.5 69 7750.0 70 6209.0 71 4668.0 72 3804.0 73 2940.0 74 2348.0 75 1296.5 76 837.0 77 579.5 78 322.0 79 279.5 80 237.0 81 162.0 82 87.0 83 75.5 84 64.0 85 42.5 86 21.0 87 18.5 88 16.0 89 10.0 90 4.0 91 3.5 92 3.0 93 3.5 94 4.0 95 2.5 96 1.0 97 1.5 98 2.0 99 1.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1066934.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 22.03489282845397 #Duplication Level Percentage of deduplicated Percentage of total 1 78.22691352560489 17.237216558374396 2 5.77096940356526 2.543253846476949 3 2.1417638749758607 1.4158061234684214 4 1.2360027572144276 1.089407531635741 5 0.9428369626091676 1.0387655712899033 6 0.6894496962269635 0.9115170100182775 7 0.5740469009847798 0.8854343359194026 8 0.469054619635763 0.8268454619492223 9 0.4644835728443617 0.9211361173382613 >10 7.505301366568531 41.7935786269286 >50 1.875841632351917 27.264800728971316 >100 0.10120065255405625 3.0369599989468123 >500 0.0012810209184057752 0.19608466207532166 >1k 4.27006972801925E-4 0.11112091454460406 >5k 4.27006972801925E-4 0.7280725120627826 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 7738 0.7252557327819715 No Hit AGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT 1181 0.11069100806610344 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.01893275497828357 0.0 2 0.0 0.0 0.0 0.07235686556056889 0.0 3 0.0 0.0 0.0 0.11078473457589691 0.0 4 0.0 0.0 0.0 0.1683328115890955 0.0 5 0.0 0.0 0.0 0.2928953431046344 0.0 6 0.0 0.0 0.0 0.45269904230252295 0.0 7 0.0 0.0 0.0 0.5397709699006686 0.0 8 0.0 0.0 0.0 0.7114779358423295 0.0 9 0.0 0.0 0.0 0.7795233819523982 0.0 10 0.0 0.0 0.0 0.8975250577823933 0.0 11 0.0 0.0 0.0 1.07504306733125 0.0 12 0.0 0.0 0.0 1.2376585618229432 0.0 13 0.0 0.0 0.0 1.301861221031479 0.0 14 0.0 0.0 0.0 1.3332596018122957 0.0 15 0.0 0.0 0.0 1.3700941201611345 0.0 16 0.0 0.0 0.0 1.4456376870546819 0.0 17 0.0 0.0 0.0 1.5414261800636215 0.0 18 0.0 0.0 0.0 1.6453688794245942 0.0 19 0.0 0.0 0.0 1.7180069245145435 0.0 20 0.0 0.0 0.0 1.7977681843487976 0.0 21 0.0 0.0 0.0 1.8993677209649331 0.0 22 0.0 0.0 0.0 2.0120269857367 0.0 23 0.0 0.0 0.0 2.1284353109002057 0.0 24 0.0 0.0 0.0 2.222161820693689 0.0 25 0.0 0.0 0.0 2.3097023808408017 0.0 26 0.0 0.0 0.0 2.3887138285967078 0.0 27 0.0 0.0 0.0 2.4712868837247663 0.0 28 0.0 0.0 0.0 2.5621078717146517 0.0 29 0.0 0.0 0.0 2.661926604644711 0.0 30 0.0 0.0 0.0 2.7774913912200754 0.0 31 9.372650979348301E-5 0.0 0.0 2.886026689560929 0.0 32 9.372650979348301E-5 0.0 0.0 2.984908157393053 0.0 33 9.372650979348301E-5 0.0 0.0 3.0892257627932 0.0 34 9.372650979348301E-5 0.0 0.0 3.1931684621541727 0.0 35 9.372650979348301E-5 0.0 0.0 3.3157627369640483 0.0 36 9.372650979348301E-5 0.0 0.0 3.425141573893043 0.0 37 9.372650979348301E-5 0.0 0.0 3.5422997111348966 0.0 38 9.372650979348301E-5 0.0 0.0 3.6810149456292516 0.0 39 9.372650979348301E-5 0.0 0.0 3.856283518943065 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TATCACG 20 7.033059E-4 45.0 12 ACCGCGT 20 7.033059E-4 45.0 45 TCGATAC 25 3.8906164E-5 45.0 24 TCGCGCG 25 3.8906164E-5 45.0 1 TAGTACG 25 3.8906164E-5 45.0 1 CGACGGT 205 0.0 42.80488 28 TAACGCC 75 0.0 42.0 12 CACGACG 210 0.0 41.785717 26 CGGTCTA 210 0.0 41.785717 31 CGTTTTT 3790 0.0 41.49736 1 AAACGCG 55 6.184564E-11 40.909092 1 ACGACGG 210 0.0 40.714287 27 CTCGTAG 50 1.0822987E-9 40.5 1 ATGGGAC 935 0.0 40.187164 5 ACGTAAG 45 1.9281288E-8 40.0 1 TATCCGG 45 1.9281288E-8 40.0 2 ATAACGC 85 0.0 39.705883 11 TTAGACG 40 3.457917E-7 39.375 1 GGGCGAT 1205 0.0 39.024895 7 ACGGTCT 225 0.0 39.0 30 >>END_MODULE