SRR1547366_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547366_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1441298
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	14100	0.9782848515712921	No Hit
AGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	2134	0.1480609839186622	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2131	0.14785283820556194	No Hit
GAGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	1504	0.10435038416760448	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACACGAT	20	7.033885E-4	45.0	28
CGTATTA	20	7.033885E-4	45.0	13
GTCGATC	20	7.033885E-4	45.0	27
CGACGAA	25	3.8913007E-5	45.0	13
GACACGT	20	7.033885E-4	45.0	9
GTTTACG	75	0.0	45.0	1
CGTGATA	35	1.2122109E-7	45.0	11
CGCATCG	185	0.0	45.0	21
ACTCTCG	20	7.033885E-4	45.0	26
ACCGAAT	20	7.033885E-4	45.0	10
CGCGAAC	25	3.8913007E-5	45.0	11
CGCGAAA	20	7.033885E-4	45.0	22
ACCTATC	35	1.2122109E-7	45.0	39
CGCTATC	20	7.033885E-4	45.0	25
ATATACG	35	1.2122109E-7	45.0	21
CTACGCT	20	7.033885E-4	45.0	31
ACTCGAC	40	6.8175723E-9	45.0	30
TCGTACT	35	1.2122109E-7	45.0	22
CGTAATC	20	7.033885E-4	45.0	21
CTCGAAT	20	7.033885E-4	45.0	29