##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547365_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 3038290 Sequences flagged as poor quality 0 Sequence length 51 %GC 39 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.360542936981 31.0 31.0 33.0 30.0 34.0 2 31.75894104907695 31.0 31.0 34.0 30.0 34.0 3 31.704691783865265 31.0 31.0 34.0 30.0 34.0 4 35.551918348808044 37.0 35.0 37.0 33.0 37.0 5 35.4799637295979 37.0 35.0 37.0 33.0 37.0 6 35.53276876137564 37.0 35.0 37.0 33.0 37.0 7 35.97259050321069 37.0 35.0 37.0 35.0 37.0 8 35.976380134878504 37.0 35.0 37.0 35.0 37.0 9 37.70781228914949 39.0 38.0 39.0 35.0 39.0 10 37.0671917427237 39.0 37.0 39.0 33.0 39.0 11 36.710625713806124 39.0 37.0 39.0 32.0 39.0 12 36.51818654572144 39.0 35.0 39.0 32.0 39.0 13 36.442731602315774 39.0 35.0 39.0 32.0 39.0 14 37.60403220232433 40.0 36.0 41.0 32.0 41.0 15 37.716647851258436 40.0 36.0 41.0 32.0 41.0 16 37.74807671420437 40.0 36.0 41.0 32.0 41.0 17 37.66684220400291 40.0 36.0 41.0 32.0 41.0 18 37.45028519331598 39.0 36.0 41.0 32.0 41.0 19 37.28824239950762 39.0 36.0 41.0 32.0 41.0 20 37.03009126844376 38.0 35.0 41.0 32.0 41.0 21 36.91208640386533 38.0 35.0 41.0 32.0 41.0 22 36.848741232732884 38.0 35.0 41.0 31.0 41.0 23 36.77580514039147 38.0 35.0 40.0 31.0 41.0 24 36.621506176171465 38.0 35.0 40.0 31.0 41.0 25 36.550976371577434 38.0 35.0 40.0 31.0 41.0 26 36.39124968320996 38.0 35.0 40.0 31.0 41.0 27 36.31126159780666 38.0 35.0 40.0 30.0 41.0 28 36.298118349466314 38.0 35.0 40.0 30.0 41.0 29 36.26506620500347 38.0 35.0 40.0 30.0 41.0 30 36.15385463533764 38.0 35.0 40.0 30.0 41.0 31 35.9771282530634 38.0 35.0 40.0 30.0 41.0 32 35.733013965092205 38.0 35.0 40.0 29.0 41.0 33 35.38004337966422 38.0 34.0 40.0 26.0 41.0 34 35.01094563060143 38.0 34.0 40.0 24.0 41.0 35 34.742974172972296 38.0 34.0 40.0 23.0 41.0 36 34.554260455716864 38.0 34.0 40.0 22.0 41.0 37 34.43040921044403 38.0 33.0 40.0 21.0 41.0 38 34.32895115344486 38.0 33.0 40.0 21.0 41.0 39 34.28687386654993 38.0 33.0 40.0 21.0 41.0 40 34.140291084787826 38.0 33.0 40.0 20.0 41.0 41 34.0608747025465 38.0 33.0 40.0 18.0 41.0 42 33.97435465343993 37.0 33.0 40.0 18.0 41.0 43 33.92550381958272 37.0 33.0 40.0 18.0 41.0 44 33.79734390068098 37.0 33.0 40.0 18.0 41.0 45 33.706291038709274 37.0 33.0 40.0 18.0 41.0 46 33.631813289712305 37.0 33.0 40.0 18.0 41.0 47 33.50549684197361 37.0 33.0 40.0 18.0 41.0 48 33.46034183702017 37.0 33.0 40.0 18.0 41.0 49 33.35167149942895 36.0 33.0 40.0 18.0 41.0 50 33.26439872428241 36.0 32.0 40.0 18.0 41.0 51 32.85862508187171 36.0 31.0 40.0 16.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 1.0 11 4.0 12 4.0 13 9.0 14 32.0 15 95.0 16 279.0 17 730.0 18 1684.0 19 3272.0 20 5654.0 21 9072.0 22 14056.0 23 21325.0 24 32443.0 25 49286.0 26 68723.0 27 76393.0 28 75271.0 29 74606.0 30 81001.0 31 93617.0 32 111774.0 33 139740.0 34 202194.0 35 281540.0 36 258075.0 37 295115.0 38 424218.0 39 717849.0 40 227.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 29.504063140779845 22.68660990228056 27.75307821175727 20.056248745182323 2 36.15566650978017 24.001955047082404 27.872125438980476 11.970253004156943 3 26.233736740074185 24.10141889023102 38.025204967267776 11.639639402427022 4 23.31900509826251 26.3339246747348 37.392348985778185 12.954721241224505 5 21.169045746126933 30.41065862705667 36.11261597806661 12.30767964874979 6 19.328569688871042 38.72178100181352 32.69984102899986 9.249808280315571 7 82.61578058710657 2.9662079656648968 13.211642074982969 1.2063693722455724 8 83.50071915452442 2.3863094043030784 12.855125745073709 1.2578456960987925 9 79.25082859108248 5.344453623584319 13.662520694206282 1.7421970911269167 10 36.26813108689427 36.72838998252306 18.480823094569644 8.522655836013021 11 23.296722827643183 25.854312787785233 35.01008791129221 15.83887647327938 12 24.31677028855047 23.680655895256873 35.469293582903546 16.53328023328912 13 21.173423208449492 26.337578045545357 35.23060668994731 17.258392056057847 14 16.16718614747111 30.81611696052714 35.63056851057667 17.386128381425078 15 15.862804406425985 29.13586260692692 39.747851587570636 15.253481399076454 16 19.588452715178605 27.736753239486685 38.07269878780498 14.60209525752973 17 19.35292549427474 27.70170062765569 33.68147872652051 19.26389515154906 18 19.474441215288863 29.11891228289597 35.610524340994445 15.796122160820724 19 21.67660098278966 29.480233947384875 32.76073054250911 16.08243452731635 20 22.757965829463284 29.5099546126275 32.43018276728028 15.301896790628938 21 22.024790260310898 27.9453574214443 34.88541251822571 15.144439800019091 22 20.333904926784474 25.76673062808356 35.12943135777032 18.76993308736164 23 18.444453952716824 28.89171211438013 35.04672035914939 17.617113573753656 24 17.932850386236996 28.572848543094963 37.26151881485967 16.232782255808363 25 18.795144637279524 29.91765104713507 34.68046170707865 16.606742608506757 26 17.509980943227934 33.05662066491349 32.46806591865819 16.965332473200387 27 17.195955619772967 31.99497085531664 34.85921357079146 15.949859954118928 28 16.42361328247139 30.709675508262873 36.818934334773836 16.047776874491902 29 16.978991472176784 29.234141573055894 36.729278640287795 17.057588314479528 30 17.705255258714605 30.162361064941134 35.67190755326187 16.46047612308239 31 20.048283738550303 30.64612002145944 32.953766756958686 16.351829483031572 32 20.072606630703454 30.97890589772537 33.042007181671266 15.90648028989991 33 19.984168726487596 30.94589390742819 32.33641291647604 16.73352444960817 34 17.920606657034057 31.02083737892038 32.76718153961603 18.29137442442953 35 17.596575705413244 31.40658067531407 32.213547752189555 18.78329586708313 36 20.764673549924463 31.49663132880666 30.72524347577091 17.013451645497963 37 18.874630137346994 32.34434500985752 31.35826402351323 17.42276082928226 38 18.643941164273325 32.820204786244894 30.362440715007455 18.173413334474326 39 18.95579421319229 31.715471531683942 31.00872530271962 18.320008952404148 40 19.615079534869942 30.970513018836254 31.087684190778365 18.326723255515436 41 17.942000269888656 31.049471906895 31.336837497408084 19.671690325808267 42 19.009278245328787 31.921343913846272 30.062206043531063 19.00717179729387 43 19.148270902382592 31.41872566476538 30.262022387593017 19.170981045259012 44 19.135105602164376 32.46533411886291 30.335616415812844 18.06394386315987 45 18.947170941549356 32.98648252800095 29.052954128802718 19.01339240164698 46 19.749530163348464 32.745458794255974 29.070398151591846 18.43461289080371 47 19.089816969413718 31.91795384904009 30.02998397124698 18.962245210299216 48 19.12223652120107 31.51246260231907 30.67613690595697 18.68916397052289 49 19.23381244055044 30.93118168443434 30.700130665604664 19.134875209410556 50 17.917414071731137 31.956231959424546 31.310210677716743 18.816143291127574 51 17.7860572888039 32.43140055755047 30.401212524150097 19.38132962949554 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 5313.0 1 5187.0 2 5061.0 3 57047.0 4 109033.0 5 70784.0 6 32535.0 7 32706.5 8 32878.0 9 36144.5 10 39411.0 11 42334.5 12 45258.0 13 44879.0 14 44500.0 15 43071.5 16 41643.0 17 38864.0 18 36085.0 19 34388.5 20 32692.0 21 31526.0 22 30360.0 23 31771.0 24 33182.0 25 34449.0 26 41622.5 27 47529.0 28 54286.5 29 61044.0 30 68984.5 31 76925.0 32 89763.5 33 102602.0 34 113888.0 35 125174.0 36 128784.0 37 132394.0 38 146401.5 39 160409.0 40 175647.0 41 190885.0 42 199188.5 43 207492.0 44 224208.5 45 240925.0 46 235106.0 47 229287.0 48 219114.5 49 208942.0 50 190535.0 51 172128.0 52 156679.5 53 141231.0 54 125495.5 55 109760.0 56 100282.5 57 90805.0 58 82793.0 59 74781.0 60 65331.5 61 55882.0 62 46642.5 63 37403.0 64 29445.0 65 21487.0 66 16516.5 67 11546.0 68 9086.5 69 6627.0 70 5452.0 71 4277.0 72 3411.5 73 2546.0 74 1920.0 75 917.5 76 541.0 77 427.0 78 313.0 79 259.5 80 206.0 81 160.0 82 114.0 83 75.0 84 36.0 85 26.5 86 17.0 87 13.0 88 9.0 89 6.5 90 4.0 91 3.0 92 2.0 93 3.5 94 5.0 95 3.0 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 3038290.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 22.534772631575596 #Duplication Level Percentage of deduplicated Percentage of total 1 80.06869666358327 18.043298742204442 2 7.130099104622673 3.2135032432654533 3 2.71849339307191 1.8378189153994786 4 1.546508537990283 1.3940087310560567 5 1.0491028366726638 1.1820646945779734 6 0.7715045537859085 1.0431407822274381 7 0.6053583850206999 0.9549129496941487 8 0.5160736385247339 0.9303681684243849 9 0.41081227290743144 0.8331805047806775 >10 3.2625000111998483 16.06163951351739 >50 0.9336931259275826 15.259382465453278 >100 0.9794477966283077 34.86335826296545 >500 0.0056339969704767585 0.8495684890137594 >1k 0.0019274200162157332 0.7975813658068454 >5k 0.0 0.0 >10k+ 1.4826307817044103E-4 2.736173171613254 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 81895 2.695430653426763 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 4345 0.1430080736203588 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.037619845373548934 0.0 2 0.0 0.0 0.0 0.11641416717956482 0.0 3 0.0 0.0 0.0 0.18204318876736586 0.0 4 0.0 0.0 0.0 0.2981282234414753 0.0 5 0.0 0.0 0.0 0.5676877454094243 0.0 6 0.0 0.0 0.0 0.9911167136777596 0.0 7 0.0 0.0 0.0 1.2875663613414123 0.0 8 0.0 0.0 0.0 1.6857837796918662 0.0 9 0.0 0.0 0.0 1.876713546106527 0.0 10 0.0 0.0 0.0 2.1135572970322123 0.0 11 0.0 0.0 0.0 2.3928920544121857 0.0 12 0.0 0.0 0.0 2.6158464136076542 0.0 13 0.0 0.0 0.0 2.726007063183567 0.0 14 0.0 0.0 0.0 2.7855142201698984 0.0 15 0.0 0.0 0.0 2.844988463905684 0.0 16 0.0 0.0 0.0 2.951495742671042 0.0 17 0.0 0.0 0.0 3.089994700966662 0.0 18 0.0 0.0 0.0 3.248669481846697 0.0 19 0.0 0.0 0.0 3.355670459370238 0.0 20 0.0 0.0 0.0 3.469221173752341 0.0 21 0.0 0.0 0.0 3.6116038956123346 0.0 22 0.0 0.0 0.0 3.773273782292013 0.0 23 0.0 0.0 0.0 3.942974502104802 0.0 24 0.0 0.0 0.0 4.0754832488011346 0.0 25 0.0 0.0 0.0 4.193806384512341 0.0 26 0.0 0.0 0.0 4.303045463072978 0.0 27 0.0 0.0 0.0 4.4190975844965426 0.0 28 0.0 0.0 0.0 4.54551737984195 0.0 29 3.2913250545537125E-5 0.0 0.0 4.690993947253225 0.0 30 3.2913250545537125E-5 0.0 0.0 4.864150558373296 0.0 31 3.2913250545537125E-5 0.0 0.0 5.015354031379493 0.0 32 3.2913250545537125E-5 0.0 0.0 5.156617702720938 0.0 33 3.2913250545537125E-5 0.0 0.0 5.306109686698768 0.0 34 3.2913250545537125E-5 0.0 0.0 5.464126202567892 0.0 35 3.2913250545537125E-5 0.0 0.0 5.634781406646502 0.0 36 3.2913250545537125E-5 0.0 0.0 5.802902290433106 0.0 37 6.582650109107425E-5 0.0 0.0 5.968620506929885 0.0 38 6.582650109107425E-5 0.0 0.0 6.150367476442341 0.0 39 6.582650109107425E-5 0.0 0.0 6.364237778487241 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGCCGAT 25 3.892325E-5 45.0 42 TCGCGAT 20 7.035119E-4 45.0 32 CCCGCGA 25 3.892325E-5 45.0 22 CGTTTTT 32550 0.0 44.12212 1 TCGTAAG 120 0.0 43.125004 1 CGGTCTA 340 0.0 43.014706 31 ACGGGTC 180 0.0 42.5 5 TATCGCG 90 0.0 42.5 1 CGACGGT 345 0.0 42.3913 28 CCAATCG 245 0.0 42.2449 24 ACGGGTA 115 0.0 41.08696 5 TAGTACG 105 0.0 40.714287 1 TACGGGA 1605 0.0 40.654205 4 CTTGACG 100 0.0 40.5 1 ATAACGC 250 0.0 40.499996 11 CTACGCG 45 1.9301297E-8 40.0 1 TACGAAG 180 0.0 40.0 1 TAACGCC 260 0.0 39.80769 12 GGACCGT 295 0.0 39.66102 8 CGGACCG 40 3.4607183E-7 39.375 44 >>END_MODULE