SRR1547356_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547356_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2335867
Sequences flagged as poor quality	0
Sequence length	51
%GC	39

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	93901	4.019963465385658	No Hit
AGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	4540	0.19436038096347094	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	4108	0.1758661773123213	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCTACAACGTTCGTATGCCGTCTT	3664	0.15685824578197302	No Hit
GAGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	3567	0.15270561209178435	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCTACAACGTTCGTATGCCGTCT	3185	0.13635194127062886	No Hit
TGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	2481	0.10621323902431087	No Hit
CGTTCTGTCTCTTATACACATCTGACGCTACAACGTTCGTATGCCGTCTTC	2470	0.10574232180171217	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTACCGA	20	7.034783E-4	45.000004	9
CCGTACG	20	7.034783E-4	45.000004	14
GTATCCG	20	7.034783E-4	45.000004	1
GCTACGT	20	7.034783E-4	45.000004	12
CGTTTTT	35565	0.0	44.493885	1
CGACGGT	1010	0.0	44.108906	28
ATATGCG	145	0.0	43.448273	1
TACGTAG	115	0.0	43.043476	1
CACGACG	1055	0.0	42.8673	26
TCACGAC	1070	0.0	42.686916	25
CGGTCTA	1055	0.0	42.654026	31
TCTCACG	1080	0.0	42.500004	23
GACGGTC	1075	0.0	41.860462	29
CTACCGG	65	0.0	41.538464	2
AACGCCG	315	0.0	41.428574	13
CTCACGA	1105	0.0	41.334843	24
GTTTGCG	180	0.0	41.250004	1
ACGGTCT	1105	0.0	40.927605	30
ATATCCG	55	6.184564E-11	40.909092	1
TAGGGTA	1765	0.0	40.7932	5