SRR1547355_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547355_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	638005
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	10313	1.616445012186425	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	879	0.13777321494345657	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	719	0.1126950415749093	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	659	0.10329072656170406	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTGTCGA	20	7.030924E-4	45.000004	21
CAAACGT	20	7.030924E-4	45.000004	35
TAGACGT	25	3.8888465E-5	45.000004	20
GACGTAG	50	2.1827873E-11	45.000004	1
TAGCGCG	25	3.8888465E-5	45.000004	1
GTTAGCG	25	3.8888465E-5	45.000004	1
TTCCGCG	20	7.030924E-4	45.000004	17
ATATGCG	20	7.030924E-4	45.000004	1
TCTAGCG	20	7.030924E-4	45.000004	1
TTATACG	20	7.030924E-4	45.000004	1
GTTAACG	20	7.030924E-4	45.000004	1
CGGGCTA	20	7.030924E-4	45.000004	6
GTCGTTA	20	7.030924E-4	45.000004	36
GCGATAT	40	6.8066583E-9	45.000004	9
CGGTCTA	85	0.0	45.000004	31
CCGGTAC	20	7.030924E-4	45.000004	35
ACGTAAC	20	7.030924E-4	45.000004	38
AGGATAC	20	7.030924E-4	45.000004	6
GTGACGC	25	3.8888465E-5	45.000004	20
TATAACG	25	3.8888465E-5	45.000004	1