##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547355_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 638005 Sequences flagged as poor quality 0 Sequence length 51 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.262626468444605 31.0 31.0 33.0 30.0 34.0 2 31.667734578882612 31.0 31.0 34.0 30.0 34.0 3 31.69525160461125 31.0 31.0 34.0 30.0 34.0 4 35.524014702079135 37.0 35.0 37.0 33.0 37.0 5 35.4161660175077 37.0 35.0 37.0 33.0 37.0 6 35.4688944444009 37.0 35.0 37.0 33.0 37.0 7 35.884482096535294 37.0 35.0 37.0 35.0 37.0 8 35.85843214394872 37.0 35.0 37.0 35.0 37.0 9 37.552332661969736 39.0 37.0 39.0 35.0 39.0 10 36.86976277615379 39.0 37.0 39.0 32.0 39.0 11 36.64521594658349 39.0 35.0 39.0 32.0 39.0 12 36.3100743724579 38.0 35.0 39.0 32.0 39.0 13 36.13132812438774 38.0 35.0 39.0 31.0 39.0 14 37.27595238281832 39.0 35.0 41.0 32.0 41.0 15 37.41449675159286 39.0 35.0 41.0 32.0 41.0 16 37.479676491563545 39.0 35.0 41.0 32.0 41.0 17 37.40527582072241 39.0 35.0 41.0 32.0 41.0 18 37.24783348092883 39.0 36.0 41.0 32.0 41.0 19 37.12288148212004 38.0 35.0 41.0 32.0 41.0 20 36.90763238532613 38.0 35.0 41.0 32.0 41.0 21 36.791496931842225 38.0 35.0 41.0 31.0 41.0 22 36.671897555661786 38.0 35.0 40.0 31.0 41.0 23 36.59022578192961 38.0 35.0 40.0 31.0 41.0 24 36.44436642346063 38.0 35.0 40.0 31.0 41.0 25 36.3410568882689 38.0 35.0 40.0 31.0 41.0 26 36.17523530379856 38.0 35.0 40.0 30.0 41.0 27 36.09816850965118 38.0 35.0 40.0 30.0 41.0 28 36.11874828567174 38.0 35.0 40.0 30.0 41.0 29 36.11811035963668 38.0 35.0 40.0 30.0 41.0 30 36.04941183846522 38.0 35.0 40.0 30.0 41.0 31 35.914293775127156 38.0 35.0 40.0 30.0 41.0 32 35.71211981097327 38.0 35.0 40.0 29.0 41.0 33 35.4315467747118 38.0 34.0 40.0 27.0 41.0 34 35.16850024686327 38.0 34.0 40.0 25.0 41.0 35 34.962702486657626 38.0 34.0 40.0 24.0 41.0 36 34.757900016457555 38.0 34.0 40.0 23.0 41.0 37 34.644209684877076 38.0 34.0 40.0 23.0 41.0 38 34.589297889514974 38.0 34.0 40.0 23.0 41.0 39 34.54749570928128 38.0 34.0 40.0 23.0 41.0 40 34.40545920486517 37.0 33.0 40.0 23.0 41.0 41 34.351061512057115 37.0 33.0 40.0 23.0 41.0 42 34.25638984020502 37.0 33.0 40.0 22.0 41.0 43 34.21150147726115 37.0 33.0 40.0 22.0 41.0 44 34.077369299613636 37.0 33.0 40.0 22.0 41.0 45 33.99760189967163 37.0 33.0 40.0 22.0 41.0 46 33.8958362395279 37.0 33.0 40.0 21.0 41.0 47 33.75393766506532 36.0 33.0 40.0 20.0 41.0 48 33.68686765777698 36.0 33.0 40.0 20.0 41.0 49 33.5802478037006 36.0 33.0 40.0 20.0 41.0 50 33.51146464369401 36.0 33.0 40.0 20.0 41.0 51 33.0705307952132 35.0 32.0 39.0 19.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 0.0 12 3.0 13 3.0 14 9.0 15 29.0 16 72.0 17 157.0 18 338.0 19 682.0 20 1212.0 21 1928.0 22 2853.0 23 4334.0 24 6235.0 25 9325.0 26 12470.0 27 14169.0 28 14628.0 29 15773.0 30 17422.0 31 20727.0 32 25182.0 33 31797.0 34 47413.0 35 64872.0 36 55374.0 37 62406.0 38 88629.0 39 139901.0 40 61.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.302105782870036 23.616742815495176 27.409189583153736 17.671961818481048 2 34.447849154787185 24.855761318484966 27.717494377003316 12.978895149724531 3 27.469690676405357 25.365788669367795 34.33781866913269 12.82670198509416 4 25.00074450827188 26.717658952516043 34.03092452253509 14.250672016676985 5 21.70641295914609 31.6484980525231 32.84253258203306 13.802556406297755 6 20.18981042468319 39.640598427912 30.3607338500482 9.808857297356603 7 83.7684657643749 3.767055117122906 10.758536375106779 1.7059427433954282 8 83.77332466046504 3.8095312732658835 10.507597902837752 1.909546163431321 9 78.69718889350396 6.713427010760103 11.938777909264035 2.650606186471893 10 36.064921121307826 32.648960431344584 19.369754155531695 11.916364291815896 11 30.798661452496457 25.445411869812933 27.120006896497678 16.635919781192936 12 29.20980243101543 22.90624681624752 30.842234778724304 17.041715974012742 13 21.522558600637925 29.789421712995978 31.53862430545215 17.149395380913944 14 17.370396783724264 32.84394322928504 31.181887289284564 18.60377269770613 15 17.19970846623459 29.232529525630678 37.241087452292696 16.32667455584204 16 18.83511884703098 27.154175907712325 37.11428593819798 16.89641930705872 17 18.820855635927618 28.077679642009073 30.237537323375207 22.863927398688098 18 20.176174167914045 29.769045697134032 31.461665660927423 18.593114474024496 19 24.07974859131198 30.789100398899695 27.98630104779743 17.144849961990893 20 25.308735824954347 28.28896325263909 29.77468828614196 16.627612636264605 21 22.7013894875432 29.635504423946518 30.27029568733787 17.392810401172405 22 22.06393366823144 26.755589689735977 29.940204230374366 21.240272411658214 23 20.21394816655042 30.398194371517462 30.013087671726712 19.374769790205406 24 19.32006802454526 28.24930839100007 34.331392387206996 18.09923119724767 25 19.728685511869028 30.806184904507017 31.106809507762478 18.358320075861474 26 18.255186087883324 35.104740558459575 28.128619681663935 18.511453671993166 27 19.287623137749705 32.95945956536391 30.272019811756962 17.480897485129425 28 17.700174763520664 31.191448342881323 34.14314934835934 16.965227545238672 29 18.509416070406974 28.661844342912673 32.99989811992069 19.828841466759663 30 18.248759805957633 31.680786200735106 31.641601554846748 18.428852438460513 31 22.825839922884615 30.36230123588373 28.218901105790707 18.592957735440947 32 22.643866427379095 31.247404017209895 28.37015383891976 17.73857571649125 33 21.688858237788107 30.659791067468124 27.770315279660817 19.881035415082955 34 18.881513467762794 30.875620097021184 28.96466328633788 21.278203148878145 35 20.166926591484394 29.10572801153596 29.98142647784892 20.74591891913073 36 22.727094615245964 30.968722815651915 27.520160500309558 18.784022068792563 37 19.469283156088117 32.711969341933056 29.925941019271008 17.892806482707815 38 19.805957633560865 32.74316032006019 27.784421752180627 19.66646029419832 39 20.030407285209364 31.748497268830185 28.15620567236934 20.064889773591116 40 20.920368962625684 31.14082178039357 28.616076676515075 19.322732580465672 41 18.30753677479017 30.159168031598497 29.643027875957085 21.89026731765425 42 19.986677220397958 31.241447951034868 27.522354840479306 21.24951998808787 43 20.115829813245977 30.717470866215784 27.804014075124805 21.362685245413438 44 19.451728434730136 32.57513655849092 28.016551594423238 19.9565834123557 45 19.227748998832297 34.304119873668704 25.55246432237992 20.91566680511908 46 20.270687533796757 34.41368014357254 25.3085790863708 20.007053236259903 47 20.531657275413203 30.857751898496094 28.36482472707894 20.245766099011764 48 19.973667917963027 29.85822995117593 29.71606805589298 20.452034074968065 49 18.895776678866152 30.16089215601759 29.91042389949922 21.03290726561704 50 18.019764735386087 31.660253446289605 29.741929922179295 20.578051896145013 51 17.75095806459197 32.05570489259488 28.153384377865375 22.03995266494777 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1041.0 1 1078.0 2 1115.0 3 7822.0 4 14529.0 5 9908.0 6 5287.0 7 5449.5 8 5612.0 9 6305.5 10 6999.0 11 7421.5 12 7844.0 13 7786.5 14 7729.0 15 7293.0 16 6857.0 17 6191.5 18 5526.0 19 5144.0 20 4762.0 21 4701.0 22 4640.0 23 4950.5 24 5261.0 25 5456.0 26 6945.0 27 8239.0 28 10057.0 29 11875.0 30 13304.5 31 14734.0 32 17139.0 33 19544.0 34 20958.0 35 22372.0 36 23066.0 37 23760.0 38 26379.0 39 28998.0 40 33054.0 41 37110.0 42 42205.5 43 47301.0 44 47389.5 45 47478.0 46 48260.0 47 49042.0 48 47826.0 49 46610.0 50 43412.0 51 40214.0 52 36278.5 53 32343.0 54 29928.0 55 27513.0 56 25487.0 57 23461.0 58 22310.0 59 21159.0 60 19791.0 61 18423.0 62 15466.5 63 12510.0 64 10472.0 65 8434.0 66 6861.0 67 5288.0 68 4364.5 69 3441.0 70 2719.0 71 1997.0 72 1794.0 73 1591.0 74 1181.0 75 651.0 76 531.0 77 366.5 78 202.0 79 153.5 80 105.0 81 70.5 82 36.0 83 34.5 84 33.0 85 23.5 86 14.0 87 11.5 88 9.0 89 11.0 90 13.0 91 7.0 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 638005.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 31.077524269494205 #Duplication Level Percentage of deduplicated Percentage of total 1 77.64716543757496 24.130816683436677 2 7.605707737949167 4.727331336255903 3 3.1385338603673847 2.9261358664859025 4 1.85646639127857 2.3077751732184035 5 1.2367986030040492 1.9218319300667437 6 0.8583305459677136 1.6004873024135902 7 0.7139659156314162 1.5531805149438895 8 0.5323507000110488 1.323531343958048 9 0.4606770317013384 1.2885031469787205 >10 5.08810323268086 37.5030586947958 >50 0.8076515096039794 15.852743392644802 >100 0.04968603135038903 2.4386048332993253 >500 0.004056002559215431 0.8010510417066465 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 5.070003199019289E-4 1.6249487397955638 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 10313 1.616445012186425 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 879 0.13777321494345657 No Hit AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 719 0.1126950415749093 No Hit AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 659 0.10329072656170406 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.05235068690684242 0.0 2 0.0 0.0 0.0 0.17366635057718982 0.0 3 0.0 0.0 0.0 0.2655151605394942 0.0 4 0.0 0.0 0.0 0.4341658764429746 0.0 5 0.0 0.0 0.0 0.8192725762337286 0.0 6 0.0 0.0 0.0 1.4294558820071943 0.0 7 0.0 0.0 0.0 1.7982617691083926 0.0 8 0.0 0.0 0.0 2.3167530035031074 0.0 9 0.0 0.0 0.0 2.534306157475255 0.0 10 0.0 0.0 0.0 2.8554635151762136 0.0 11 0.0 0.0 0.0 3.2037366478319136 0.0 12 0.0 0.0 0.0 3.5206620637769297 0.0 13 0.0 0.0 0.0 3.665331776396737 0.0 14 0.0 0.0 0.0 3.742760636672126 0.0 15 0.0 0.0 0.0 3.8128227835205055 0.0 16 0.0 0.0 0.0 3.9634485623153424 0.0 17 0.0 0.0 0.0 4.145108580653757 0.0 18 0.0 0.0 0.0 4.356548929867321 0.0 19 0.0 0.0 0.0 4.483977398296251 0.0 20 0.0 0.0 0.0 4.615481069897571 0.0 21 0.0 0.0 0.0 4.79917868982218 0.0 22 0.0 0.0 0.0 4.993691272011975 0.0 23 0.0 0.0 0.0 5.234441736350028 0.0 24 0.0 0.0 0.0 5.3938448758238575 0.0 25 0.0 0.0 0.0 5.545097608952908 0.0 26 0.0 0.0 0.0 5.7005822838379006 0.0 27 0.0 0.0 0.0 5.84854350671233 0.0 28 0.0 0.0 0.0 6.0071629532683914 0.0 29 0.0 0.0 0.0 6.172835636084357 0.0 30 0.0 0.0 0.0 6.371109944279434 0.0 31 0.0 0.0 0.0 6.55653168862313 0.0 32 0.0 0.0 0.0 6.734900196706922 0.0 33 0.0 0.0 0.0 6.9102906717031995 0.0 34 0.0 0.0 0.0 7.0866215782007975 0.0 35 0.0 0.0 0.0 7.289598043902477 0.0 36 0.0 0.0 0.0 7.484894319010039 0.0 37 0.0 0.0 0.0 7.687400568961058 0.0 38 0.0 0.0 0.0 7.8906905118298445 0.0 39 0.0 0.0 0.0 8.093823716115077 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTGTCGA 20 7.030924E-4 45.000004 21 CAAACGT 20 7.030924E-4 45.000004 35 TAGACGT 25 3.8888465E-5 45.000004 20 GACGTAG 50 2.1827873E-11 45.000004 1 TAGCGCG 25 3.8888465E-5 45.000004 1 GTTAGCG 25 3.8888465E-5 45.000004 1 TTCCGCG 20 7.030924E-4 45.000004 17 ATATGCG 20 7.030924E-4 45.000004 1 TCTAGCG 20 7.030924E-4 45.000004 1 TTATACG 20 7.030924E-4 45.000004 1 GTTAACG 20 7.030924E-4 45.000004 1 CGGGCTA 20 7.030924E-4 45.000004 6 GTCGTTA 20 7.030924E-4 45.000004 36 GCGATAT 40 6.8066583E-9 45.000004 9 CGGTCTA 85 0.0 45.000004 31 CCGGTAC 20 7.030924E-4 45.000004 35 ACGTAAC 20 7.030924E-4 45.000004 38 AGGATAC 20 7.030924E-4 45.000004 6 GTGACGC 25 3.8888465E-5 45.000004 20 TATAACG 25 3.8888465E-5 45.000004 1 >>END_MODULE