SRR1547348_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547348_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	699383
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	12016	1.7180857984823765	No Hit
AGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	1236	0.17672720097571717	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1003	0.14341212182738214	No Hit
AACGCGGGGGCACTGGCAAATTTTTGTTTATGTTAAGTTGTGACAGAATGT	919	0.13140153535330426	No Hit
TGCATAGGGGAATTTATATGTGATGAAATCCATAATGTCTGGAACTTTGCT	826	0.11810410032843234	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTTCGTA	25	3.889233E-5	45.000004	11
GGTACCG	25	3.889233E-5	45.000004	1
GATCGGA	25	3.889233E-5	45.000004	10
TTAGCCG	25	3.889233E-5	45.000004	1
ATAATCG	25	3.889233E-5	45.000004	44
CGGCAAC	50	2.1827873E-11	45.000004	38
TGAACCG	25	3.889233E-5	45.000004	44
ATTCGTG	25	3.889233E-5	45.000004	36
ATTCGCA	25	3.889233E-5	45.000004	26
TTCCGGC	25	3.889233E-5	45.000004	14
CGATTGA	25	3.889233E-5	45.000004	10
ATATGCG	25	3.889233E-5	45.000004	1
CGATTAC	25	3.889233E-5	45.000004	10
CGACAAC	25	3.889233E-5	45.000004	30
TGTGCGC	25	3.889233E-5	45.000004	29
TAGCCGT	25	3.889233E-5	45.000004	44
ATCGTTA	25	3.889233E-5	45.000004	40
ATCGTAG	25	3.889233E-5	45.000004	1
CGCTATC	25	3.889233E-5	45.000004	19
CTCGGCT	25	3.889233E-5	45.000004	45