SRR1547345_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547345_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1864164
Sequences flagged as poor quality	0
Sequence length	51
%GC	40

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	44193	2.370660521284608	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2959	0.1587306696191966	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	1996	0.10707212455556485	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTGCCC	20	7.034416E-4	45.000004	25
CACGATT	30	2.1662308E-6	45.000004	38
CGCGAAA	20	7.034416E-4	45.000004	28
CTACGGT	20	7.034416E-4	45.000004	11
TCTAACG	20	7.034416E-4	45.000004	17
TTGCGTC	20	7.034416E-4	45.000004	16
TACTCGA	40	6.8193913E-9	45.000004	30
TTACGCA	20	7.034416E-4	45.000004	25
CCGCGAA	20	7.034416E-4	45.000004	27
GACGATA	20	7.034416E-4	45.000004	9
GCTCGAT	20	7.034416E-4	45.000004	28
AATCGAC	20	7.034416E-4	45.000004	27
AGTCGAC	30	2.1662308E-6	45.000004	18
AGCGTAA	50	2.1827873E-11	45.0	21
TCCGATC	25	3.8917424E-5	45.0	21
AAGCGTA	50	2.1827873E-11	45.0	20
TCGATTG	25	3.8917424E-5	45.0	1
CCGCTCG	85	0.0	45.0	19
TGCGCGT	35	1.2124656E-7	45.0	37
CGTAGAC	25	3.8917424E-5	45.0	33