SRR1547342_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547342_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2690586
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	46983	1.7461995267945347	No Hit
AGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	4671	0.17360530382600667	No Hit
GAGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	3518	0.13075218558336363	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGCGAT	30	2.166591E-6	45.000004	11
CGGCGAA	25	3.892206E-5	45.0	38
CGTATAG	20	7.034977E-4	45.0	1
CGACGGC	55	1.8189894E-12	45.0	28
ATCGTCC	20	7.034977E-4	45.0	33
CCCCGTA	20	7.034977E-4	45.0	41
CGCTAGC	20	7.034977E-4	45.0	30
TCGCTAA	25	3.892206E-5	45.0	41
ACTACCG	35	1.2127384E-7	45.0	42
GACGGCG	25	3.892206E-5	45.0	9
CGTCGTT	25	3.892206E-5	45.0	45
CGTCGCA	25	3.892206E-5	45.0	37
CCGCGAT	35	1.2127384E-7	45.0	10
CGGTACC	20	7.034977E-4	45.0	33
AATCGGC	25	3.892206E-5	45.0	10
CGACGGT	730	0.0	44.38356	28
CGTTTTT	16835	0.0	43.44966	1
CGAACGG	145	0.0	43.448273	2
GACGGTC	750	0.0	43.2	29
GCGCGAC	225	0.0	43.0	9