SRR1547341_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547341_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1069560
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	17161	1.6044915666255284	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1862	0.17409028011518757	No Hit
AGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	1668	0.15595198025356222	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCACGGT	20	7.0330664E-4	45.0	18
TATCACG	35	1.211829E-7	45.0	1
AACCGTA	20	7.0330664E-4	45.0	27
CTATGCG	35	1.211829E-7	45.0	1
TCGTTGT	20	7.0330664E-4	45.0	40
TCGTTGC	20	7.0330664E-4	45.0	43
GTCGCAT	25	3.8906233E-5	45.0	21
TCCGCCG	40	6.8139343E-9	45.0	16
CTCCGTC	20	7.0330664E-4	45.0	16
GGTCGCT	50	2.1827873E-11	45.0	8
CGAGTCT	20	7.0330664E-4	45.0	34
TAGACCG	25	3.8906233E-5	45.0	25
ACGCACG	20	7.0330664E-4	45.0	32
GTTTACG	25	3.8906233E-5	45.0	1
ACACCGC	20	7.0330664E-4	45.0	26
CGTGATA	25	3.8906233E-5	45.0	10
CGGTTCC	25	3.8906233E-5	45.0	39
CGCATGA	25	3.8906233E-5	45.0	18
CGTTGCT	20	7.0330664E-4	45.0	44
GGCCGTA	35	1.211829E-7	45.0	9