SRR1547339_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547339_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	3768503
Sequences flagged as poor quality	0
Sequence length	51
%GC	39

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	116000	3.0781453537386065	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCACAATCCCTCGTATGCCGTCTT	6312	0.16749356442067315	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCACAATCCCTCGTATGCCGTCT	5497	0.14586693973707862	No Hit
CGTTCTGTCTCTTATACACATCTGACGCACAATCCCTCGTATGCCGTCTTC	4307	0.11428941412544981	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TACTCGC	70	0.0	45.0	45
CGTTTTT	47430	0.0	44.250473	1
TTAGGCG	90	0.0	42.500004	1
CGACGGT	490	0.0	42.2449	28
ACGGGAC	1615	0.0	41.656345	5
CGGTCTA	490	0.0	40.867348	31
GGCGATC	830	0.0	40.12048	8
CTACGCG	45	1.9303116E-8	40.000004	1
AATGCGG	660	0.0	39.545452	2
TAGGGCG	1030	0.0	39.538834	5
GTTTTTT	53840	0.0	39.287243	2
TACGGGA	1765	0.0	39.13598	4
CGGGACC	1305	0.0	38.793106	6
TCACGAC	535	0.0	38.271027	25
GACGGTC	530	0.0	38.207546	29
TCGTAAG	165	0.0	38.181816	1
GGGCGAT	4280	0.0	38.113316	7
CGTAAGG	520	0.0	38.07692	2
GCTCGAT	65	9.094947E-12	38.07692	45
TAAGGGA	5580	0.0	37.943546	4