##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547339_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 3768503 Sequences flagged as poor quality 0 Sequence length 51 %GC 39 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.323527405975263 31.0 31.0 33.0 30.0 34.0 2 31.72301468248798 31.0 31.0 34.0 30.0 34.0 3 31.647251707110225 31.0 31.0 34.0 30.0 34.0 4 35.52308754961851 37.0 35.0 37.0 33.0 37.0 5 35.45867417380323 37.0 35.0 37.0 33.0 37.0 6 35.515953417046504 37.0 35.0 37.0 33.0 37.0 7 35.9505596784718 37.0 35.0 37.0 35.0 37.0 8 35.94886245280951 37.0 35.0 37.0 35.0 37.0 9 37.66454425006428 39.0 37.0 39.0 35.0 39.0 10 37.0184234960142 39.0 37.0 39.0 33.0 39.0 11 36.711473494912966 39.0 37.0 39.0 32.0 39.0 12 36.59047637748995 39.0 35.0 39.0 32.0 39.0 13 36.54420283067308 39.0 35.0 39.0 32.0 39.0 14 37.72434916464177 40.0 36.0 41.0 32.0 41.0 15 37.816591893385784 40.0 36.0 41.0 32.0 41.0 16 37.832814780829416 40.0 36.0 41.0 33.0 41.0 17 37.744629366090464 40.0 36.0 41.0 32.0 41.0 18 37.49700212524708 39.0 36.0 41.0 32.0 41.0 19 37.30740163932469 39.0 36.0 41.0 32.0 41.0 20 37.031645987810016 38.0 35.0 41.0 32.0 41.0 21 36.915528526844746 38.0 35.0 41.0 32.0 41.0 22 36.84991228612529 38.0 35.0 40.0 31.0 41.0 23 36.75178950368356 38.0 35.0 40.0 31.0 41.0 24 36.60542952997517 38.0 35.0 40.0 31.0 41.0 25 36.53103632927982 38.0 35.0 40.0 31.0 41.0 26 36.38361784507004 38.0 35.0 40.0 31.0 41.0 27 36.29567470159902 38.0 35.0 40.0 30.0 41.0 28 36.27538866228845 38.0 35.0 40.0 30.0 41.0 29 36.216775467606105 38.0 35.0 40.0 30.0 41.0 30 36.10867630992996 38.0 35.0 40.0 30.0 41.0 31 35.91374161039543 38.0 35.0 40.0 30.0 41.0 32 35.62919121996188 38.0 35.0 40.0 28.0 41.0 33 35.20630154732529 38.0 34.0 40.0 25.0 41.0 34 34.78019919315442 38.0 34.0 40.0 23.0 41.0 35 34.47226657375621 38.0 34.0 40.0 21.0 41.0 36 34.278262482476464 38.0 33.0 40.0 20.0 41.0 37 34.16743306294303 38.0 33.0 40.0 18.0 41.0 38 34.069355391252174 38.0 33.0 40.0 18.0 41.0 39 34.01318109604795 38.0 33.0 40.0 18.0 41.0 40 33.883008186539854 38.0 33.0 40.0 18.0 41.0 41 33.778460041029554 37.0 33.0 40.0 18.0 41.0 42 33.698780391046526 37.0 33.0 40.0 18.0 41.0 43 33.64628978668718 37.0 33.0 40.0 17.0 41.0 44 33.51220126400324 37.0 33.0 40.0 16.0 41.0 45 33.44217000756003 37.0 33.0 40.0 17.0 41.0 46 33.36046806915107 37.0 33.0 40.0 17.0 41.0 47 33.23874758756992 37.0 32.0 40.0 15.0 41.0 48 33.16526456261279 37.0 32.0 40.0 15.0 41.0 49 33.0420320748053 36.0 32.0 40.0 15.0 41.0 50 32.97910018912019 36.0 32.0 40.0 15.0 41.0 51 32.5955072876418 36.0 31.0 40.0 15.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 4.0 11 3.0 12 7.0 13 18.0 14 37.0 15 118.0 16 351.0 17 882.0 18 2043.0 19 4012.0 20 7259.0 21 11514.0 22 17354.0 23 26589.0 24 40826.0 25 63705.0 26 91766.0 27 104207.0 28 101762.0 29 98426.0 30 104374.0 31 118038.0 32 140344.0 33 172164.0 34 242232.0 35 331045.0 36 329447.0 37 370945.0 38 526302.0 39 862474.0 40 254.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 28.07608220027953 22.63638903829982 26.501557780370614 22.785970981050035 2 36.86471789991941 23.548581492438775 27.735894067219796 11.850806540422019 3 25.35614274421435 23.647612858474574 38.75119642998825 12.245047967322833 4 22.134863631526898 26.05029105721821 38.77911202405836 13.035733287196535 5 20.319341659008895 29.931222026359006 37.423507424566196 12.325928890065896 6 18.973024567049567 37.30038161041666 34.055591835803234 9.67100198673054 7 80.53898325143963 2.7705165685154025 15.247884902838077 1.442615277206891 8 81.23689963892824 2.2682746968756557 15.01078810339278 1.4840375608033216 9 76.65351467147565 5.0946755250028986 16.09121712255503 2.160592680966421 10 33.59999978771411 35.40220082085645 21.53040610555438 9.467393285875055 11 21.485268818944817 25.31411013869433 36.46811479253167 16.732506249829175 12 22.311618167744594 22.856343752413093 37.1447495199022 17.687288559940114 13 20.74792032804538 24.20255470142919 37.675782664893724 17.373742305631705 14 16.008823662870906 28.66085021028244 37.36205066043466 17.968275466411995 15 15.44597417064548 29.047900452779263 39.91298401513811 15.593141361437155 16 19.276434170279284 27.466290991409586 38.53755722099731 14.719717617313824 17 18.86648358778008 27.620092116153284 35.52622885002347 17.987195446043163 18 18.731045192215586 28.523129741438446 36.07320997223566 16.672615094110313 19 20.015056376497512 30.40947559282824 33.71397077300987 15.861497257664384 20 21.866985378544214 28.93461939661452 33.95995704395087 15.238438180890396 21 21.38997899165796 27.461620701907364 35.93522414603358 15.213176160401092 22 20.48789665286189 25.34749209434091 35.95379916109925 18.21081209169795 23 17.88099943133918 28.235190472184847 36.5042830004381 17.37952709603787 24 17.792768109777278 28.277063863290014 37.37961731753961 16.550550709393093 25 18.404576034568635 29.884811024430658 34.68464798886985 17.02596495213086 26 17.88115864575403 32.079767483268554 33.31508559234263 16.72398827863478 27 17.06667077086047 31.190634583546835 35.31120978277051 16.431484862822188 28 16.694162111586483 30.397295690092324 36.60472076047173 16.303821437849457 29 16.843717518600887 29.22319552352751 36.267929201595436 17.665157756276166 30 17.276966477139595 29.524959911137127 36.07997658486673 17.118097026856553 31 18.829572379271024 29.577792561131037 33.57861198465279 18.014023074945143 32 18.622328282609832 31.01106725933348 33.77924868309778 16.58735577495892 33 18.36042057018397 31.28695930453021 32.61180898622079 17.740811139065034 34 17.287952271764144 31.076822812665934 33.20124728572592 18.433977629843998 35 17.59889802396336 30.711531873531744 32.40920864332601 19.28036145917888 36 18.411342647199696 31.25047266779408 31.42388370129996 18.914300983706262 37 17.912948457252124 31.85835330368584 31.650498885101058 18.578199353960976 38 18.29936184208955 32.095609317545986 30.7094355504029 18.895593289961557 39 17.9915738424515 31.51920006432262 30.98729124004943 19.501934853176447 40 19.292063718670253 30.478070469892156 31.35075121341286 18.87911459802473 41 17.31374500696961 31.256761637180595 31.584637188825376 19.844856167024414 42 18.33911237433007 32.02892501346025 30.15932321136536 19.47263940084431 43 18.933751678053593 31.82152170238421 30.285049527624096 18.959677091938097 44 18.468367943451288 32.470055085533964 30.37487299333449 18.68670397768026 45 18.05817853932981 32.24131704286822 30.220833046968522 19.479671370833458 46 19.103341565603106 32.2363548602721 29.906358041906827 18.753945532217966 47 18.540571680585103 31.163939633323896 31.278574012014847 19.01691467407615 48 18.561932947910616 30.998250498938173 31.324613513641893 19.115203039509325 49 18.01906486474868 30.890860376122824 31.076079812063305 20.013994947065186 50 17.37607745038282 31.262148391549644 32.25392151737706 19.10785264069048 51 16.576529194749217 31.69011673866254 31.48603039456251 20.247323672025736 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 4191.0 1 4979.5 2 5768.0 3 82624.5 4 159481.0 5 104085.0 6 48689.0 7 48601.0 8 48513.0 9 52288.5 10 56064.0 11 59251.5 12 62439.0 13 61999.5 14 61560.0 15 58668.0 16 55776.0 17 51968.5 18 48161.0 19 44864.5 20 41568.0 21 40565.0 22 39562.0 23 40150.5 24 40739.0 25 43001.0 26 52783.5 27 60304.0 28 68719.0 29 77134.0 30 86145.5 31 95157.0 32 107412.0 33 119667.0 34 130437.5 35 141208.0 36 150987.0 37 160766.0 38 171789.0 39 182812.0 40 197846.5 41 212881.0 42 222645.0 43 232409.0 44 243262.5 45 254116.0 46 268142.0 47 282168.0 48 275482.5 49 268797.0 50 251915.0 51 235033.0 52 206826.0 53 178619.0 54 160870.5 55 143122.0 56 128340.5 57 113559.0 58 105359.0 59 97159.0 60 87586.5 61 78014.0 62 65416.5 63 52819.0 64 41562.0 65 30305.0 66 22790.5 67 15276.0 68 11945.0 69 8614.0 70 6764.0 71 4914.0 72 3887.0 73 2860.0 74 2131.5 75 1039.5 76 676.0 77 589.0 78 502.0 79 352.0 80 202.0 81 175.0 82 148.0 83 90.0 84 32.0 85 26.0 86 20.0 87 17.5 88 15.0 89 12.0 90 9.0 91 7.5 92 6.0 93 4.0 94 2.0 95 1.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 3768503.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 23.94534017917553 #Duplication Level Percentage of deduplicated Percentage of total 1 79.09820553758594 18.940334391598412 2 7.096603205372752 3.3986115573855606 3 2.826032927565399 2.0301095942431435 4 1.644071525549509 1.5747140783271627 5 1.162410663508027 1.3917159382800424 6 0.8844452644875705 1.2707005636809452 7 0.7172930316807633 1.2023077956223605 8 0.5575332614021968 1.068025888438464 9 0.4731450589641432 1.0196657451893225 >10 3.8176321035153977 19.794091597476186 >50 0.972354368169324 16.718744424676295 >100 0.7439649116381922 26.5822493632283 >500 0.0037172971161766656 0.5766355571824139 >1k 0.0022529073431372415 0.984660913787213 >5k 2.2529073431372412E-4 0.31852789291640043 >10k+ 1.1264536715686206E-4 3.128904697967859 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 116000 3.0781453537386065 No Hit CGTTTCTGTCTCTTATACACATCTGACGCACAATCCCTCGTATGCCGTCTT 6312 0.16749356442067315 No Hit CGTTTTCTGTCTCTTATACACATCTGACGCACAATCCCTCGTATGCCGTCT 5497 0.14586693973707862 No Hit CGTTCTGTCTCTTATACACATCTGACGCACAATCCCTCGTATGCCGTCTTC 4307 0.11428941412544981 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 5.3071471616182875E-5 0.0 0.0 0.06395112329750036 0.0 2 5.3071471616182875E-5 0.0 0.0 0.17492357044693874 0.0 3 5.3071471616182875E-5 0.0 0.0 0.30654082005507227 0.0 4 5.3071471616182875E-5 0.0 0.0 0.45070947270043304 0.0 5 5.3071471616182875E-5 0.0 0.0 0.830276637699373 0.0 6 5.3071471616182875E-5 0.0 0.0 1.5377458900788987 0.0 7 5.3071471616182875E-5 0.0 0.0 2.023960177290558 0.0 8 5.3071471616182875E-5 0.0 0.0 2.569216476675221 0.0 9 5.3071471616182875E-5 0.0 0.0 2.887008448712924 0.0 10 5.3071471616182875E-5 0.0 0.0 3.2009527390584536 0.0 11 5.3071471616182875E-5 0.0 0.0 3.525882824028533 0.0 12 5.3071471616182875E-5 0.0 0.0 3.78675564275788 0.0 13 5.3071471616182875E-5 0.0 0.0 3.9475622017549146 0.0 14 5.3071471616182875E-5 0.0 0.0 4.045266781000307 0.0 15 5.3071471616182875E-5 0.0 0.0 4.12864206290933 0.0 16 5.3071471616182875E-5 0.0 0.0 4.25099834072044 0.0 17 5.3071471616182875E-5 0.0 0.0 4.398775853435701 0.0 18 5.3071471616182875E-5 0.0 0.0 4.575875354218903 0.0 19 5.3071471616182875E-5 0.0 0.0 4.70425524405845 0.0 20 7.96072074242743E-5 0.0 0.0 4.824329448590063 0.0 21 7.96072074242743E-5 0.0 0.0 4.973433748095729 0.0 22 7.96072074242743E-5 0.0 0.0 5.138539096293674 0.0 23 7.96072074242743E-5 0.0 0.0 5.32463421151582 0.0 24 7.96072074242743E-5 0.0 0.0 5.471827938043303 0.0 25 7.96072074242743E-5 0.0 0.0 5.605037331799922 0.0 26 7.96072074242743E-5 0.0 0.0 5.72837543183593 0.0 27 7.96072074242743E-5 0.0 0.0 5.862885076647146 0.0 28 7.96072074242743E-5 0.0 0.0 6.008035551517406 0.0 29 7.96072074242743E-5 0.0 0.0 6.1696647183244915 0.0 30 7.96072074242743E-5 0.0 0.0 6.343181894773601 0.0 31 1.3267867904045717E-4 0.0 0.0 6.502184023735685 0.0 32 1.3267867904045717E-4 0.0 0.0 6.667793550913983 0.0 33 1.3267867904045717E-4 0.0 0.0 6.825123928520158 0.0 34 1.3267867904045717E-4 0.0 0.0 6.993015528977952 0.0 35 1.3267867904045717E-4 0.0 0.0 7.168124849575547 0.0 36 1.592144148485486E-4 0.0 0.0 7.334132412790968 0.0 37 1.592144148485486E-4 0.0 0.0 7.5127975219868475 0.0 38 1.592144148485486E-4 0.0 0.0 7.6877476281695944 0.0 39 1.592144148485486E-4 0.0 0.0 7.882466857529369 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TACTCGC 70 0.0 45.0 45 CGTTTTT 47430 0.0 44.250473 1 TTAGGCG 90 0.0 42.500004 1 CGACGGT 490 0.0 42.2449 28 ACGGGAC 1615 0.0 41.656345 5 CGGTCTA 490 0.0 40.867348 31 GGCGATC 830 0.0 40.12048 8 CTACGCG 45 1.9303116E-8 40.000004 1 AATGCGG 660 0.0 39.545452 2 TAGGGCG 1030 0.0 39.538834 5 GTTTTTT 53840 0.0 39.287243 2 TACGGGA 1765 0.0 39.13598 4 CGGGACC 1305 0.0 38.793106 6 TCACGAC 535 0.0 38.271027 25 GACGGTC 530 0.0 38.207546 29 TCGTAAG 165 0.0 38.181816 1 GGGCGAT 4280 0.0 38.113316 7 CGTAAGG 520 0.0 38.07692 2 GCTCGAT 65 9.094947E-12 38.07692 45 TAAGGGA 5580 0.0 37.943546 4 >>END_MODULE